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Publications: |
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2005 |
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G.A. Zornetzer, R.D. White, J.L. Markley, B.G. Fox
"Preparation of isotopically labeled spinach acyl-acyl carrier protein for
NMR structural studies," Protein Exp. Purif. available online
(2005). |
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R.K. Andjus, Z. Dzakula, J.L. Markley, S. Macura
"Brain energetics and tolerance to anoxia in deep hypothermia," Ann.
N.Y. Acad. Sci. 1048, 10-35 (2005). |
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J. Song, R.C. Tyler, M.S. Lee, E.M. Tyler, J.L.
Markley "Solution structure of isoform 1 of Roadblock/LC7, a light chain
inthe dynein complex," J. Mol. Biol. 354,
1043-1051 (2005). |
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H . Blad, N.J. Reiter, F. Abildgaard, J.L.
Markley, S.E. Butcher "Dynamics in the U6 RNA intramolecular stem loo: II.
NMR analysis of metal binding and conformational exchange on the
microsecond time scale," J. Mol. Biol. 353,
540-555 (2005). |
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K. Uchida, J.L. Markley, M. Kainosho "Carbon-13
NMR method for the detection of correlated hydrogen exchange at adjacent
backbone peptide amides and its application to hydrogen exchange in five
anti-parallel beta-strands within the hydrophobic core of
Streptomyces subtilisin inhibitor (SSI,)" Biochemistry
44, 11811-11820 (2005). |
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Q. Zhao, J. Song, Z. Jin, V. Danilova, G.
Hellekant, J.L. Markley "Structural and functional consequences of
inserting two residues into a solvent-exposed loop of the sweet protein
brazzein," Biochem. Biophys. Res. Commun. 325,
256-263 (2005). |
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S. Singh, C.C. Cornilescu, R.C. Tyler, G.
Cornilescu, M. Tonelli, M.S. Lee, J.L. Markley "Solution structure of a
late embryogenesis abundant (LEA) protein from Arabidopsis
thaliana, a cellular stress related protein," Protein Sci.
14, 2601-2609 (2005). |
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Y.K. Chae, K. Lee, J.L. Markley "1H, 15N and 13C
resonance assignment of a protein involved in the autophagy process,
At4g21980.1 from Arabidopsis thaliana," J. Biomol. NMR
32, 337 (2005). |
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J. Song, Q. Zhao, M.S. Lee, J.L. Markley "1H, 15N
and 13C resonance assigments of the putative Bet v 1 family protein
At1g24000.1 from Arabidopsis thaliana," J. Biomol. NMR
32, 335 (2005). |
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F.C. Peterson, B.L. Lytle, S. Sampath, D. Vinarov,
E. Tyler, M. Shahan, J.L. Markley, B.F. Volkman "Solution structure of
thioredoxin h1 from Arabidopsis thaliana," Protein Sci.
14, 2095-2102 (2005). |
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E. Bitto, C.A. Bingman, S.T.M. Allard, G.E.
Wesenberg, D.J. Aceti, R.L. Wrobel, R.O. Frederick, H. Sreenath, F.C.
Vojtik, W.B. Jeon, C.S. Newman, J. Primm, M.R. Sussman, B.G. Fox, J.L.
Markley, G.N. Phillips Jr. "The structure at 2.4 A resolution of the
protein from gene locus At3g21360, a putative
FeII/2-oxoglutarate-dependent enzyme from Arabidopsis thaliana,"
Acta Cryst. F61, 469-472 (2005). |
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V. Stolc, M.P. Samanta, W. Tongprasit, H. Sethi,
S. Liang, D.C. Nelson, A. Hegeman, C. Nelson, D. Rancour, S. Bednarek,
E.L. Ulrich, Q. Zhao, R.L. Wrobel, C.S. Newman, B.G. Fox, G.N. Phillips,
Jr., J.L. Markley, M.R. Sussman "Identification of novel transcribed
sequences in Arabidopsis thalianan using high-resolution genome
tiling arrays," Proc. Natl. Acad. Sci. USA 102,
4453-4458 (2005). |
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J. Song, R.C. Tyler, R.L. Wrobel, R.O. Frederick,
F.C. Vojtek, W.B. Jeon, M.S. Lee, J.L. Markley "Solution structure of
At3g04780.1-des15, an Arabidopsis thaliana ortholog of the
C-terminal domain of human thioredoxin-like protein," Prot. Sci.
14, 1059-1063 (2005). |
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D.A. Vinarov, J.L. Markley "High-throughput
automated platform for NMR-based structural proteomics," Exp. Rev.
Prot. 2, 49-55 (2005). |
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R.C. Tyler, H.K. Sreenath, D.J. Aceti, C.A.
Bingman, S. Singh, J.L. Markley, B.G. Fox "Auto-induction medium for the
production of [U-13C, U-15N]-labeled proteins for NMR
screeing and structure determination," Prot. Exp. Purif.
40, 268-278 (2005). |
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W.F. Vranken, W. Boucher, T.J. Stevens, R.H. Fogh,
A. Pajon, M. Llinas, E. Ulrich, J.L. Markley, J. Ionides, E.D. Laue "The
CCPN data model for NMR spectroscopy: development of a software pipeline
for HTP projects," Proteins 59, 687-696 (2005).
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R.C. Tyler, D.J. Aceti, C.A. Bingman, C.c.
Cornilescu, B.G. Fox, R.O. Frederick, W.B. Jeon, M.S. Lee, C.S. Newman,
F.C. Peterson, G.N. Phillips, Jr., M.N. Shahan, S. Singh, J. Song, H.
Sreenath, E.M. Tyler, E.L. Ulrich, D.A. Vinarov, F.C. Vojtek, B.F.
Volkman, R.L. Wrobel, Q. Zhao, J.L. Markley "Comparison of cell-based and
cell-free protocols for producing target proteins from the Arabidopsis
thaliana genome for structural studies," Proteins
59, 633-643 (2005). |
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C.J. Oldfield, E.L. Ulrich, Y.G. Cheng, A.K.
Dunker, J.L. Markley "Addressing the intrinsic disorder bottleneck in
structural proteomics," Proteins 59, 444-453
(2005). |
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N. Sugimori, T. Torizawa, D.J. Aceti, S. Thao,
J.L. Markley, M. Kainosho "1H, 13C and 15N backbone assignment of a 32 kDa
hypothetical protein from Arabidopsis thaliana, At3g16450.1,"
J. Biomol. NMR 30, 357-358 (2005). |
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T.E. Malone, S.E. Madson, R.L. Wrobel, W.B. Jeon,
N.S. Rosenberg, K.A. Johnson, C.A. Bingman, D.W. Smith, G.N. Phillips,
Jr., J.L. Markley, G.G. Fox "X-ray structure of Arabidopsis
At2g06050, 12-oxophytodienoate reductase isoform 3," Proteins
58, 243-245 (2005). |
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F.M. Assadi-Porter, F. Abildgaard, H. Blad, C.C.
Cornilescu, J.L. Markley "Brazzein, a small sweet protein: effects of
mutations on its structure, dynamics and functional properties," Chem.
Sens. 30, i90-i91 (2005). |
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I.-J. Lin, E.B. Gebel, T.E. Machonkin, W.M.
Westler, J.L. Markley "Changes in hydrogen-bond strengths explain
reduction potentials in 10 rubredoxin variants," Proc. Nat. Acad.
Sci. 102, 14581-14586 (2005). |
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T.E. Machonkin, W.M. Westler, J.L. Markley
"Paramagentic NMR spectroscopy and density functional calculations in the
analysis of the geometric and electronic structures of iron-sulfur
proteins," Inorg. Chem. 44, 779-797 (2005).
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J.F. Doreleijers, A.J. Nederveen, W. Vranken, J.
Lin, A.M.J.J. Bonvin, R. Kaptein, J.L. Markley, E.L. Ulrich "BioMagResBank
databases DOCR and FRED containing converted and filtered sets of
experimental NMR restraints and coordinates from over 500 protein PDB
structures," J. Biomol. NMR 32, 1-12
(2005). |
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A.J. Nederveen, J.F. Doreleijers, W. Vranken, Z.
Miller, C.A.E.M. Spronk, S.B. Nabuurs, P. Güntert, M. Livny, J.L. Markley,
M. Nilges, E.L. Ulrich, R. Kaptein, A.M.J.J. Bonvin "RECOORD: A
recalculated coordinate database of 500+ proteins from the PDB using
restraints from the BioMagResBank," Prot. Struct. Funct. Bioinf.
59, 662-672 (2005). |
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L. Wang, H.R. Eghbalnia, A. Bahrami, J.L. Markley
"Linear analysis of carbon-13 chemical shift differences and its
application to the detection and correction of errors in referencing and
spin system identifications," J. Biomol. NMR 32,
13-22 (2005). |
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H.R. Eghbalnia, L. Wang, A. Bahrami, A. Assadi,
J.L. Markley "Protein energetic conformational analysis from NMR chemical
shifts (PECAN) and its use in determining secondary structural elements,"
J. Biomol. NMR 32, 71-81 (2005). |
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S. Singh, M. Tonelli, R.C. Tyler, A. Bahrami, M.S.
Lee, J.L. Markley "Three-dimensional structure of the AAH26994.1 protein
from Mus musculus, a putative eukaryotic Urm1," Prot. Sci.
14, 2095-2102 (2005). |
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H.R. Eghbalnia, A. Bahrami, L. Wang, A. Assadi,
J.L. Markley "Probabilistic identification of spin systems and their
assignments including coil-helix inference as output (PISTACHIO)," J.
Biomol. NMR 32, 219-233 (2005). |
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H.R. Eghbalnia, A. Bahrami, M. Tonelli, K.
Hallenga, J.L. Markley "High resolution iterative frequency identification
for NMR (HIFI-NMR) as a general strategy for multidimensional data
collection," J. Am. Chem. Soc. 127, 12528-12536
(2005). |
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2004 |
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L. Skjeldal, F.C. Peterson, J.F. Doreleijers, L.A. Moe,
J.D. Pikus, W.M. Westler, J.L. Markley, B.F. Volkman, B.G. Fox "Solution
structure of T4moC, the Rieske ferredoxin component of the tolulene
4-monooxygenasee complex," J. Biol. Inorg. Chem.
9, 945-953 (2004). |
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J. Song, Q. Zhao, S. Thao, R.O. Frederick, J.L. Markley
"Letter to the Editor: Solution structure of a calmodulin-like
calcium-binding domain from Arabidopsis thaliana," J. Biomol.
NMR 30, 451-456 (2004). |
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B.L. Lytle, F.C. Peterson, S.H. Qiu, M. Luo, Q. Zhao,
J.L. Markley, B.F. Volkman "Solution structure of a ubiquitin-like domain
from tubulin-binding cofactor B," J. Biol. Chem.
279, 46787-46793 (2004). |
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C.A. Bingman, K.A. Johnson, F.C. Peterson, R.O.
Frederick, Q. Zhao, S. Thao, B.G. Fox, B.F. Volkman, W.B. Jeon, D.W.
Smith, C.S. Newman, E.L. Ulrich, A. Hegeman, M.R. Sussman, J.L. Markley,
G.N. Phillips Jr. "Crystal structure of the protein from gene At3g17210 of
Arabidopsis thaliana," Proteins: Struct. Func. Bioinf.
57, 218-220 (2004). |
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D.W. Smith, K.A. Johnson, C.A. Bingman, D.J. Aceti, P.G.
Blommerl, R.L. Wrobel, R.O. Frederick, Q. Zhao, H. Sreenath, B.G. Fox,
B.F. Volkman, W.B. Jeon, C.S. Newman, E.L. Ulrich, A.D. Hegeman, T.
Kimball, S. Thao, M.R. Sussman, J.L. Markley, G.N. Phillips Jr. "Crystal
structuure of At2g03760, a putative steroid sulfotransferase from
Arabidopsis thaliana," Proteins: Struct. Funct.
Bioinform. 57, 854-857 (2004). |
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Q. Zhao, R. Frederick, K. Seder, S. Thao, H. Sreenath,
F. Peterson, B.F. Volkman, J.L. Markley, B.G. Fox "Production in two-liter
beverage bottles of proteins for NMR structure determination labeled with
either 15N- or 13C-15N," J. Struct. Funct. Genomics
5, 87-93 (2004). |
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G. Cornilescu, C.C. Cornilescu, Q. Zhao, R.O. Frederick,
F.C. Peterson, S. Thao, J.L. Markley "Solution structure of a homodimeric
hypothetical protein, At5g22580, a structural genomics target from
Arabidopsis thaliana," J. Biomol. NMR
29, 387-390 (2004). |
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Y.K. Chae, H. Im, Q. Zhao, J.H. Doelling, R.D. Vierstra,
J.L. Markley "Prevention of aggregation after refolding by balanced
stabilization-destabilization: production of the Arabidopsis
thaliana protein APG8a (At4g21980) for NMR," Prot. Exp.
Purif. 34, 280-283 (2004). |
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T.E. Machonkin, W.M. Westler, J.L. Markley "Novel
strategy for the study of paramagnetic proteins with slow electronic
relaxation rates by NMR spectroscopy: application to oxidized human
[2Fe-2S] ferredoxin," J. Am. Chem. Soc. 126,
5413-5426 (2004). |
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O. Y. Dmitriev, F. Abildgaard, J.L. Markley, R.H.
Fillingame "Backbone 1H, 15N and 13C assignments for the subunit A of the
E. coli ATP synthase," J. Biomol. NMR
29, 439-440 (2004). |
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I.Y. Park, M.K. Eidsness, I.-J. Lin, E.B. Gebel, B.
Youn, J.L. Harley, T.E. Machonkin, R.O. Frederick, J.L. Markley, E. Smith,
T. Ichiye, C.H. Kang "Crystallographic studies on V44 mutants of
Clostridium pasteurianum rubredoxin: effects of side chain size
on reduction potential," Proteins 57, 618-625
(2004). |
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D.A. Vinarov, B.L. Lytle, F.C. Peterson, E.M. Tyler,
B.F. Volkman, J.L. Markley "Cell-free protein production and labeling
protocol for NMR-based structural proteomics," Nature Methods
1, 149-153 (2004). |
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N. Sugimori, T. Torizawa, D.J. Aceti, S. Thao, J.L.
Markley, M. Kainosho "Letter to the Editor: 1H, 13C and 15N backbone
assignment of a 32kDa hypothetical protein from Arabidopsis
thaliana, At3g16450," J. Biomol. NMR 30,
357-358 (2004). |
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J.F. Doreleijers, S. Mading, D. Maziuk, K. Sojourner, L.
Yin, J. Zhu, J.L. Markley, E.L. Ulrich "BioMagResBank database with sets
of experimental NMR constraints corresponding to the stuctures of over
1400 biomolecules deposited in the Protein Data Bank," J. Biomol.
NMR 26, 139-146 (2004). |
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C.J. Oldfield, E.L. Ulrich, Y.G. Cheng, A.K. Dunker,
J.L. Markley "Addressing the intrinsic disorder bottleneck in structural
proteomics," Proteins: Struct. Func. Bioinf. 59,
444-453 (2004). |
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J. Song, D.A. Vinarov, E.M. Tyler, M.N. Shahan, R.C.
Tyler, J.L. Markley "Hypothetical protein At2g24940.1 from Arabidopsis
thaliana has a cytochrome B5 like fold," J. Biomol. NMR
30, 215-218 (2004). |
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2003 |
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Z. Zolnai, P.T. Lee, J. Li, M.R. Chapman, C.S.
Newman, G.N. Phillips, Jr., I. Rayment, E.L. Ulrich, B.F. Volkman, and
J.L. Markley, "Project Managment System for Structural and Functional
Proteomics: Sesame," J. Structural and Functional Genomics
4, 11-23 (2003). |
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F.A.J. Rotsaert, J.D. Pikus, B.G. Fox, J.L.
Markley, J. Sanders-Loehr, "N-Isotope Effects on the Raman Spectra of
Fe2S2 Ferredoxins and Rieske Ferredoxins: Evidence for Structural Rigidity
of Metal Sites," J. Biol. Inorg. Chem. 8,
318-326 (2003). |
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J. Song, M. Laskowski, Jr., M.A. Qasim, and J.L.
Markley, "NMR Determination of pKa Values for Asp, Glu, His, and Lys
Mutants at Each Variable Contiguous Enzyme - Inhibitor Contact Position of
Turkey Ovomucoid Third Domain," Biochemistry 42,
2847-2856 (2003). |
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I.-J. Lin, E.B. Gebel, T.E. Machonkin, W.M.
Westler, and J.L. Markley, "Correlation Between Hydrogen Bond Lengths and
Reduction Potentials in Clostridium pasteurianum Rubredoxin," J. Am.
Chem. Soc. 125, 1464-1465 (2003). |
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J.F. Doreleijers, S. Mading, d. Maziuk, K.
Sojourner, L. Yin, J. Zhu, J.L. Markley, and E.L. Ulrich, "BioMagResBank
database with sets of experimental NMR constraints corresponding to the
structures of over 1400 biomolecules deposited in the Protein Data Bank,"
J. Biomolecular NMR 26, 139-146 (2003).
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J. Song and J.L. Markley, "Protein Inhibitors of
Serine Proteinases: Role
of Backbone Structure and Dynamics in Controlling
the Hydrolysis Constant," Biochemistry 42,
5186-5194 (2003). |
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J. Song, M. Laskowski, Jr., M.A. Qasim, and J.L.
Markley, "Two Conformational States of Turkey Ovomucoid Populted at Low
pH: Three-Dimensional Structures, Internal Dynamics, and Interconversion
Kinetics and Thermodynamics," Biochemistry 42,
6380-6391 (2003). |
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F.M. Assadi-Porter, F. Abildgaard, H. Blad, and
J.L. Markley, "Correlation of the Sweetness of Variants of the Protein
Brazzein with Patterns of Hydrogen Bonds Detected by NMR Spectroscopy,"
J. Biol. Chem. 278, 32331-31339 (2003).
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Z. Jin, V. Danilova, F.M. Assadi-Porter, D.J.
Aceti, J.L. Markley, and G. Hellekant, "Critical Regions for the Sweet
Taste of Brazzein," FEBS Lett. 544, 33-37
(2003). |
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W-.J. Wu, G. Vidugiris, E.S. Mooberry, W.M.
Westler, J.L. Markley, "Mixing Apparatus for Preparing NMR Samples Under
Pressure," J. Magn. Reson. 164, 84-91 (2003).
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J.L. Markley, E.L. Ulrich, W.M. Westler, and B.F.
Volkman, "Macromolecular Structure Determination by NMR Spectroscopy,"
Methods Biochem. Anal. 44, 89-113 (2003).
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Z. Jin, V. Danilova, F.M. Assadi-Porter, J.L.
Markley, and G. Hellekant, "Monkey Electrophysiological and Human
Psychophysical Responses to Mutants of the Sweet Protein Brazzein:
Delineating Brazzein Sweetness," Chemical Senses
28, 491-498 (2003). |
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Q. Zhao, R. Frederick, K. Seder, S. Thao, H.
Sreenath, F. Peterson, B.F. Volkman, J.L. Markley, and B.G. Fox,
"Production in Two-Liter Beverage Bottles of Proteins for NMR Structure
Determination Labeled with Either 15N- or 13C,15N," J. Struct. Funct.
Genomics, in press (2003). |
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Y. K. Chae, H. Im, Q. Zhao, J. H. Doelling, R. D.
Vierstra, and J. L. Markley, "Prevention of Aggregation after Refolding by
Balanced Stabilization-Destabilization: Production of the Arabidopsis
thaliana Protein At4g21980 (APG8a) for NMR Structure Determination"
Protein Prod. Purif., in press (2003). |
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2002 |
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W.F. Walkenhorst, J.A. Edwards, J.L. Markley, and
H. Roder, "Early formation of a beta hairpin during folding of
staphylococcal nuclease H124L as detected by pulsed hydrogen exchange,"
Protein Science 11, 82-91 (2002). |
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M. L. DeRider, S. J. Wilkens, M. J. Waddell, L. E.
Bretscher, F. Weinhold, R. T. Raines, and J. L. Markley "Collagen
Stability: Insights from NMR Spectroscopic and Hybrid Density Functional
Computational Investigations of the Effect of Electronegative Substituents
on Prolyl Ring Conformation," J Am Chem Soc 124, 2497-2505
(2002). |
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T. E. Machonkin, W. M. Westler, and J. L. Markley,
"13C{13C} 2D NMR: a Novel Strategy for the Study of Paramagnetic Proteins
with Slow Electronic Relaxation Rates," J. Am. Chem. Soc.
124, 3204-3205 (2002). |
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J. L. Markley, E. L. Ulrich, W. M. Westler, and B.
F. Volkman, "Macromolecular Structure Determination by NMR," In Structural
Bioinformatics (H. Weissig, and P. Bourne,eds.), Wiley and Sons, New York,
(2002). |
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S. J. Wilkens, W. Westler, F. Weinhold, and J. L.
Markley, "Trans-Hydrogen-Bond h2JNN and h1JNH Couplings in the DNA A-T
Base Pair: Natural Bond Orbital Analysis," J. Am. Chem. Soc.
124, 1190-1191 (2002). |
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T. E. Machonkin and J. L. Markley,
Electron-Nuclear Interactions in Iron-Sulfur Proteins, In Encyclopedia of
Nuclear Magnetic Resonance: Supplementary Volume, (D. M. Grant and R. K.
Harris, eds), John Wiley & Sons, Ltd, New York, pp. 384-401,
2002. |
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W. M. Westler, P. A. Frey, J. Lin, D. Wemmer, P.
G. Williams, and J. L. Markley, "Evidence for a Strong Hydrogen Bond in
the Catalytic Dyad of Transition State Analog Inhibitor Complexes of
Chymotrypsin from Proton-Triton NMR Chemical Shift Differences," J. Am.
Chem. Soc. 124, 4196-4197 (2002). |
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O. Y. Dmitriev, F. Abildgaard, J. L. Markley, and
R. H. Fillingame, "Structure of Ala24/Asp61?Asp24/Asn61 Substituted
Subunit c of Escherichia coli ATP Synthase: Implications for the Mechanism
of Proton Transport and Rotary Movement in the Fo Complex,"
Biochemistry 41, 5537-5547 (2002). |
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E. S. Kuloglu, D. R. McCaslin, J. L. Markley, and
B. F. Volkman, "Structural rearrangement of human lymphotactin, a C
chemokine, under physiological solution conditions," J. Biol. Chem.
277, 17863-17870 (2002). |
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R. Fogh, J. Ionides, E. Ulrich, W. Boucher, W.
Vranken, J. P. Linge, Habeck, M., W. Rieping, T. N. Bhat, J. Westbrook, K.
Henrick, G. Gilliland, H. Berman, J. Thornton, M. Nilges, J. Markley, and
E. Laue, "The CCPN project: an interim report on a data model for the NMR
community," Nature Struct. Biol. 9, 416-418
(2002). |
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B. J. Goodfellow, S. G. Nunes, F. Rusnak, I.
Moura, C. Ascenso, J. J. G. Moura, B. F. Volkman, and J. L. Markley,
"Pseudocontact shifts in Desulfovibrio gigas desulforedoxin", Protein
Sci. 11 2464-2470 (2002). |
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| |
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| |
Q. Zhao, Y. K. Chae, and J. L. Markley "NMR
Solution Structure of ATTp - an Arabidopsis thaliana Trypsin Inhibitor,"
Biochemistry, 41 12284-12296 (2002). |
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| |
M. A. Kennedy, G. T. Montelione, C. H. Arrowsmith,
and J. L. Markley, "A Role for NMR in Structural Genomics," Journal of
Structural and Functional Genomics, 2 11-23 (2002). |
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| |
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| |
W. M Westler, F. Weinhold, and J. L. Markley,
"Quantum Chemical Calculations on Structural Models of the Catalytic Site
of Chymotrypsin: Comparison of Calculated Results with Experimental Data
from NMR Spectroscopy," J. Am. Chem. Soc. 124 , 14373-14381
(2002). |
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2001 |
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| |
D. Chen, A.L. Zangl, Q. Zhao, J.L. Markley, J.
Zheng, I.M. Bird, R.R. Magness, "Ovine caveolin-1: cDNA cloning, E. coli
expression, and association with endothelial nitric oxide synthase ,"
Mol Cell Endocrinol 175, 41-56 (2001).
|
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| |
H.Hemmi, J.M. Studts, Y.K. Chae, J, Song, J.L.
Markley, and B.G. Fox, "Solution structure of the toluene 4-monooxygenase
effector protein (T4moD) ," Biochemistry 40, 3512-3524
(2001). |
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| |
|
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| |
J. Song, and J.L. Markley, "NMR chemical shift
mapping of the binding site of a protein proteinase inhibitor: changes in
the (1)H, (13)C and (15)N NMR chemical shifts of turkey ovomucoid third
domain upon binding to bovine chymotrypsin A(alpha)," J Mol
Recognit 14, 166-171 (2001). |
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| |
S. J. Wilkens, W. M. Westler, J. L. Markley, and
F. Weinhold, "Natural J-Coupling Analysis: Interpretation of Scalar
J-Couplings in Terms of Natural Bond Orbitals," J Am Chem Soc
123, 12026-12036 (2001). |
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| |
E. S. Kuloglu, D. R. McCaslin, M. Kitabwalla, C.
D. Pauza, J. L., Markley, and B. F. Volkman, "Monomeric Solution Structure
for the Prototypical ‘C’ Chemokine Lymphotactin," Biochemistry
40, 12486-12496 (2001). |
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| |
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| |
W. Luo, L. A. Moe, L. Skjeldal, J. D. Pikus, F.
Abildgaard, J. L. Markley, and B. G. Fox, "Assignment of 1H, 13C and 15N
NMR signals from toluene 4-monooxygenase Rieske ferredoxin in its oxidized
state," J Biomol NMR 21, 73-74 (2001). |
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2000 |
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F.M. Assadi-Porter, D.J. Aceti, H. Cheng, and J.L.
Markley, "Efficient production of recombinant brazzein, a small,
heat-stable, sweet-tasting protein of plant origin ," Arch. Biochem.
Biophys. 376, 252-258 (2000). |
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F.M. Assadi-Porter, D.J. Aceti, and J.L. Markley ,
"Sweetness determinant sites of brazzein, a small, heat-stable,
sweet-tasting protein ," Arch Biochem Biophys 376, 259-265
(2000). |
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| |
H.Hemmi, J.M. Studts, Y.K. Chae, J.L. Markley, and
B.G. Fox, "Assignment of 1H, 13C and 15N NMR signals in the toluene
4-monooxygenase effector protein ," J. Biomol NMR 16,
359-360 (2000). |
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| |
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| |
Y.Kee Chae, and J.L. Markley, "Functional
recombinant rabbit muscle phosphoglucomutase from Escherichia coli ,"
Protein Expr Purif 20, 124-127 (2000). |
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| |
B. Xia, D. Jenk, D.M. LeMaster, W.M. Westler, and
J.L. Markley, "Electron-nuclear interactions in two prototypical 2Fe-2S
proteins: selective (chiral) deuteration and analysis of (1)H and (2)H NMR
signals from the alpha and beta hydrogens of cysteinyl residues that
ligate the iron in the active sites of human ferredoxin and Anabaena 7120
vegetative ferredoxin ," Arch Biochem Biophys 373, 328-334
(2000). |
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1999 |
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J.E. Caldwell and J.L. Markley,
"Structure-Function Relationships in Sweet-Tasting Proteins," J Chem
Soc Pakistan 21, 268-280 (1999). |
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| |
Y.K. Chae, F. Abildgaard, C.A., Royer and J.L.
Markley, "Oligomerization of the EK18 mutant of the trp repressor of
Escherichia coli as observed by NMR spectroscopy ," Arch Biochem
Biophys 371, 35-40 (1999). |
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| |
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| |
R.W. Curley, Jr., A.K. Sundaram, J.W. Fowble, F.
Abildgaard, W.M. Westler, and J.L. Markley, "NMR Studies of
Retinoid-Protein Interactions: The Conformation of
[13-C]-beta-Ionones Bound to beta-Lactoglobin B," Pharmaceutical
Research 16, 651-659 (1999). |
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| |
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| |
G. Kaslik, W.M. Westler, L. Graf, and J.L.
Markley, "Properties of the His57 - Asp102 Dyad of Rat Trypsin D189S in
the Zymogen, Activated Enzyme, and alpha1-Proteinase Inhibitor Complexed
Forms," Arch. Biochem. Biophys. 362, 254-264 (1999).
|
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M.A. Qasim, S.M. Lu, J. Ding, K.S. Bateman, M.N.G.
James, S. Anderson, J. Song, J.L. Markley, P.J. Ganz, C.W. Saunders, and
M. Laskowski, Jr., "Thermodynamic Criterion for the Conformation of P1
Residues of Substrates and of Inhibitors in Complexes with Serine
Proteinases," Biochemistry 38, 7142-7150 (1999). |
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| |
J. Schleucher, P. Vanderveer, J.L. Markley, and
T.D. Sharkey, "Intramolecular Deuterium Distribution of Glucose Reveals
Metabolic Regulation and Explains Hydrogen Isotope Ratios," Plant, Cell
and Environment 22, 525-533 (1999). |
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| |
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| |
B.F. Volkman, M.E. Anderson, K.D. Clark, Y.
Hoyakawa, M.R. Strand, and J.L. Markley, "Structure of the Insect Cytokine
Peptide Plasmatocyte-Spreading Peptide 1 from Pseudoplusia
includens," J. Biol. Chem. 274, 4493-4496 (1999).
|
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B.F. Volkman, S.J. Wilkens, A.L. Lee, B. Xia, W.W.
Westler, R. Beger, and J.L. Markley, "Redox-Dependent Magnetic Alignment
of Clostridium pasteurianum Rubredoxin: Measurement of Magnetic
Susceptibility Anisotropy and Prediction of Pseudocontact Shift
Contributions," J. Am. Chem. Soc. 121, 4677-4683 (1999).
|
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B. Xia, J.D. Pikus, W. Xia, K. McClay, R.J.
Steffan, Y.K. Chae, W.M. Westler, J.L. Markley, and B.G. Fox, "Detection
and Classification of Hyperfine-Shifted 1-H, 2-H, and 15-N Resonances of
the Rieske Ferredoxin Component of Toluene 4-Monooxygenase,"
Biochemistry 38, 727-39 (1999). |
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1998 |
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| |
S.L. Alam, B.F. Volkman, J.L. Markley, and J.D.
Satterlee, "Detailed NMR Analysis of the Heme-Protein Interactions in
Component IV-Glycera dibranchiata Monomeric Hemoglobin-CO," J. Biomol.
NMR 11, 119-133 (1998). |
|
| |
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| |
J.E. Caldwell, F. Abildgaard, D. Ming, G.
Hellekant, and J.L. Markley, "Complete 1-H and Partial 13-C Resonance
Assignments at 37 and 22 ?C for Brazzein, an Intensely Sweet Protein,"
J. Biomol. NMR 11, 231-232 (1998). |
|
| |
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| |
J.E. Caldwell, F. Abildgaard, Z. Dzakula, D. Ming,
G. Hellekant, and J.L. Markley, "Solution structure of the Thermostable
Sweet-Tasting Protein Brazzein," Nature Structural Biology
5, 427-431 (1998). |
|
| |
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|
| |
Y.K. Chae, F. Abildgaard, E.R. Chapman, and J.L.
Markley, "Lipid Binding Ridge on Loops 2 and 3 of the C2A Domain of
Synaptotagmin I as Revealed by NMR Spectroscopy," J. Biol. Chem.
273, 25659-25663 (1998). |
|
| |
|
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| |
S. Choe, Z. Dzakula, J.L. Markley, "Assignment of
1-H, 13-C, and 15-N Signals of Turkey Ovomucoid Third Domain at pH 2.0,"
J. Biomol. NMR 12, 193-195 (1998). |
|
| |
|
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| |
R. Chylla, B.F. Volkman, and J.L. Markley,
"Practical Model Fitting Approaches to the Direct Extraction of NMR
Parameters Simultaneously from All Dimensions of Multidimensional NMR
Spectra, J. Biomol. NMR 12, 277-297 (1998). |
|
| |
|
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| |
Z. Dzakula, N. Juranic, M.L. DeRider, W.M.
Westler, S. Macura, and J.L. Markley, "Analysis of Error Propagation from
NMR-Derived Internuclear Distances into Molecular Structure of
Cyclo-Pro-Gly," J. Magn. Reson. 135, 454-465 (1998).
|
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| |
M.E. Girvin, V.K. Rastogi, F. Abildgaard, J.L.
Markley, and R.H. Fillingame, "Solution Structure of the Transmembrane
H+-Translocating Subunit of the F1F0 ATP Synthase," Biochemistry
37, 8817-8824 (1998). |
|
| |
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| |
M. Hirasawa, J.K. Hurley, Z. Salamon, G. Tollin,
J.L. Markley, H. Cheng, B. Xia, and D.B. Knaff, "The Role of Aromatic and
Acidic Amino Acids in the Electron Transfer Reaction Catalyzed by Spinach
Ferredoxin-Dependent Glutamate Synthase," Biochim. Biophys. Acta
1363, 134-146 (1998). |
|
| |
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| |
J. Lin, W.M. Westler, W.W. Cleland, J.L. Markley,
and P.A. Frey, "Fractionation Factors and Activation Energy for Exchange
of the Low Barrier Hydrogen Bonding Proton in Peptidyl Trifluoromethyl
Ketone Complexes of Chymotrypsin," Proc. Natl. Acad. Sci. U.S.A.
95, 14664-14668 (1998). |
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| |
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| |
J.L. Markley, A. Bax, Y. Arata, C.W. Hilbers, R.
Kaptein, B.D. Sykes, P.E. Wright, and K. Wuthrich, "Recommendations for
the Presentation of NMR Structures of Proteins and Nucleic Acids," Pure
and Appl. Chem. 70, 117-142 (1998). |
|
| |
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| |
J.L. Markley, A. Bax, Y. Arata, C.W. Hilbers, R.
Kaptein, B.D. Sykes, P.E. Wright, and K. Wuthrich, "Recommendations for
the Presentation of NMR Structures of Proteins and Nucleic Acids," J.
Biomol. NMR 12, 1-23 (1998). |
|
| |
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| |
J.L. Markley, A. Bax, Y. Arata, C.W. Hilbers, R.
Kaptein, B.D. Sykes, P.E. Wright, and K. Wuthrich, "Recommendations for
the Presentation of NMR Structures of Proteins and Nucleic Acids," J.
Mol. Biol. 280, 933-952 (1998). |
|
| |
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| |
J.L. Markley, A. Bax, Y. Arata, C.W. Hilbers, R.
Kaptein, B.D. Sykes, P.E. Wright, and K. Wuthrich, "Recommendations for
the Presentation of NMR Structures of Proteins and Nucleic Acids," Eur.
J. Biochem. 256, 1-15 (1998). |
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| |
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| |
K.E. Prehoda, E.S. Mooberry, and J.L. Markley,
"High Pressure Effects on Protein Structure," In Protein Dynamics,
Function and Design (O. Jardetzky and J.-F. Lefevre, Eds.), NATO ASI
Series, Plenum Press, pp. 59-86 (1998). |
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| |
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| |
K.E. Prehoda, E.S. Mooberry, and J.L. Markley,
"Pressure Denaturation of Proteins: Evaluation of Compressibility
Effects," Biochemistry 37, 5785-5790 (1998). |
|
| |
|
|
| |
B.F. Volkman, S.L. Alam, J.D. Satterlee, and J.L.
Markley, "Solution Structure and Backbone Dynamics of Component IV-Glycera
dibranchiata Monomeric Hemoglobin-CO," Biochemistry 37,
10906-10919 (1998). |
|
| |
|
|
| |
L. Wang, Y. Li, F. Abildgaard, J.L. Markley, and
H. Yan, "NMR Solution Structure of Type II Human Cellular Retinoic Acid
Binding Protein: Implications for Ligand Binding," Biochemistry
37, 12727-12736 (1998). |
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| |
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| |
A.M. Weber-Main, J.K., Hurley, H. Cheng, B. Xia,
Y.K. Chae, J.L. Markley, M. Martinez Julvez, C. Gomez-Moreno, M. T.
Stankovich, and G. Tollin, "An Electrochemical, Kinetic, and Spectroscopic
Characterization of [2Fe-2S] Vegetative and Heterocyst Ferredoxins
from Anabaena 7120 with Mutations in the Cluster Loop," Arch. Biochem.
Biophys. 355, 181-188 (1998). |
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| |
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| |
S.J. Wilkens, B. Xia, B.F. Volkman, F. Weinhold,
J.L. Markley, and W.M. Westler, "Inadequacies of the Point-Dipole
Approximation for Describing Electron-Nuclear Interactions in Paramagnetic
Proteins: Hybrid Density Functional Calculations and the Analysis of NMR
Relaxation of High-Spin Fe(III) Rubredoxin," J. Phys. Chem.
102, 8300-8305 (1998). |
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| |
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| |
S.J. Wilkens, B. Xia, F. Weinhold, J.L. Markley,
and W.M. Westler, "NMR Investigations of Clostridium pasteurianum
Rubredoxin. Origin of Hyperfine 1-H, 2-H, 13-C, and 15-N NMR Chemical
Shifts in Iron-Sulfur Proteins: Comparison of Hybrid Density Functional
Calculations with Experimental Data," J. Am. Chem. Soc. 120,
4806-4814 (1998). |
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B. Xia, B.F. Volkman, and J.L. Markley, "Evidence
for Oxidation-State-Dependent Conformational Changes in Human Ferredoxin
from Multinuclear, Multidimensional NMR Spectroscopy," Biochemistry
37, 3965-3973 (1998). |
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| |
B. Xia, S.J. Wilkens, W.M. Westler, and J.L.
Markley, "Amplification of One-Bond 1-H/2-H Isotope Effects on 15-N
Chemical Shifts in Clostridium pasteurianum Rubredoxin by
Fermi-Contact Effects through Hydrogen Bonds," J. Am. Chem. Soc.
120, 4893-4894 (1998). |
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1997 |
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Z. An, Q, Zhao, J. McEvoy, W.M. Yuan, J.L.
Markley, and S.A. Leong, "The Second Finger of Urbs1 is Required for
Iron-Mediated Repression of sid1 in Ustilago maydis,"
Proc. Natl. Acad. Sci. USA 94, 5882-5887 (1997).
|
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P.T. Chivers, K.E. Prehoda, B.F. Volkman, B.-M.
Kim, J.L. Markley, and R.T. Raines, "Microscopic pK(a) Values of
Escherichia coli Thioredoxin," Biochemistry 36,
14985-14991 (1997). |
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| |
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| |
J. K. Hurley, A.M. Weber-Main, M.T. Stankovich,
M.M. Benning, J.B. Thoden, J.L. Vanhooke, H.M. Holden, Y.K. Chae, B. Xia,
H. Cheng, J.L. Markley, M. Martinez-Julvez, C. Gomez-Moreno, J.L.
Schmeits, and G. Tollin, "Structure-Function Relationships in Anabaena
Ferredoxin: Correlations Between X-ray Crystal Structures, Reduction
Potentials, and Rate Constants of Electron Transfer to Ferredoxin:NADP+
Reductase for Site-Specific Ferredoxin Mutants," Biochemistry
36, 11100-11117 (1997).
|
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J.K. Hurley, A.M. Weber-Main, A.E. Hodges, M.T.
Stankovich, M.M. Benning, H.M. Holden, H. Cheng, B. Xia, J.L. Markley, C.
Genzor, C. Gomez-Moreno, R. Hafezi, and G. Tollin, "Iron-Sulfur Cluster
Cysteine-to-Serine Mutants of Anabaena [2Fe-2S] Ferredoxin Exhibit
Unexpected Redox Properties and are Competent in Electron Transfer to
Ferredoxin:NADP+ Reductase," Biochemistry 36, 15109-15117
(1997). |
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| |
G. Kaslik, J. Kardos, E. Szabo, L. Szilagyi, P.
Zavodszky, W.M. Westler, J.L. Markley, and L. Graf, "Effects of Serpin
Binding on the Target Proteinase: Global Stabilization, Localized
Increased Structural Flexibility, and Conserved Hydrogen Bonding at the
Active Site," Biochemistry 29, 5455-5464 (1997).
|
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A.M. Prantner, B.F. Volkman, S.J. Wilkens, B. Xia,
and J.L. Markley, "Assignment of 1-H, 13-C, and 15-N Signals of Reduced
Clostridium pasteurianum Rubredoxin: Oxidation State-Dependent
Changes in Chemical Shifts and Relaxation Rates," J. Biomol. NMR
10, 411-412 (1997). |
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| |
H. Remigy, M. Jaquinod, Y. Pétillot, J. Gagnon, H.
Cheng, B. Xia, J.L. Markley, J. K. Hurley, G. Tollin, and E. Forest,
"Probing the Influence of Mutations on the Stability of a Ferredoxin by
Mass Spectrometry," J. Protein Chem. 16, 527-532 (1997).
|
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B.F. Volkman, A.M. Prantner, S.J. Wilkens, B. Xia,
and J.L. Markley, "Assignment of 1-H, 13-C, and 15-N Signals of Oxidized
Clostridium pasteurianum Rubredoxin," J. Biomol. NMR
10, 409-410 (1997). |
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| |
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| |
J. Wang, D.M. Truckses, F. Abildgaard, Z. Dzakula,
Z. Zolnai, and J.L. Markley, "Solution Structures of Staphylococcal
Nuclease from Multinuclear NMR: Nuclease H124L and its Ternary Complex
with Ca(2+) and Thymidine-3',5'-Bisphosphate," J. Biomol. NMR
10, 143-164 (1997).
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1996 |
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| |
Z. Dzakula, M.L. DeRider, and J.L. Markley,
"Conformational Analysis of Molecules with Five-Membered Rings through NMR
Determination of the Continuous Probability Distribution (CUPID) for
Pseudorotation," J. Am. Chem. Soc. 118, 12796-12803 (1996).
|
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| |
Z. Dzakula, W.M. Westler, and J.L. Markley,
"Continuous Probability Distribution (CUPID) Analysis of Potentials for
Internal Rotations," J. Magn. Reson. Ser. B 111, 109-126
(1996).
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| |
A.P. Hinck, D.M. Truckses, and J.L. Markley,
"Engineered Disulfide Bonds in Staphylococcal Nuclease: Effects on
Conformational Forms and Stability of the Folded Protein,"
Biochemistry 35, 10328-10338 (1996). |
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| |
A.P. Hinck, W.F. Walkenhorst, D.M. Truckses, and
J.L. Markley, "NMR and Mutagenesis Investigations of a Model
Cis:Trans Peptide Isomerization Reaction: Xaa-116-Pro-117 of
Staphylococcal Nuclease and its Role in Protein Folding and Stability,"
In Biological NMR Spectroscopy (J.L. Markley and S. J.
Opella, Eds.), Oxford University Press, 133-160 (1996). |
|
| |
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| |
C.B. Hoogstraten and J.L. Markley, "Approaches to
the Determination of More Accurate Cross-Relaxation Rates and the Effects
of Improved Distance Constraints on Protein Solution Structures,"
In Dynamics and the Problem of Recognition in Biological
Macromolecules (O. Jardetzky and J.-F. Lefevre, Eds.), Plenum Press,
pp. 73-111 (1996).
|
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C.G. Hoogstraten and J.L. Markley, "Effects of
Experimentally Achievable Improvements in the Quality of NMR Distance
Constraints on the Accuracy of Calculated Protein Structures," J. Mol.
Biol. 258, 334-348 (1996).
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J.L. Markley and S.J. Opella, Eds., Biological
NMR Spectroscopy, Oxford University Press, New York, 1996.
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| |
J.L. Markley, C.A. Royer, and D. Northrop, Eds.,
High-Pressure Effects in Molecular Biophysics and Enzymology,
Oxford University Press, New York, 1996. |
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| |
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| |
J.L. Markley and W.M. Westler, "Protonation-State
Dependence of Hydrogen Bond Strengths in a Serine Protease Catalytic
Triad: Bovine Chymotrypsinogen A," Biochemistry 35,
11092-11097 (1996).
|
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| |
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| |
J.L. Markley, B. Xia, Y. K. Chae, H. Cheng, W.M.
Westler, J.D. Pikus, and B.G. Fox, "NMR Approaches to the Study of
Structure-Function Relationships in Iron-Sulfur Proteins: Rubredoxin,
[2Fe-2S] Ferredoxins, and a Rieske Protein," In Protein
Structure Function Relationship (Z. Zaidi and D. Smith, Eds.), Plenum
Press, London, pp. 135-146 (1996).
|
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| |
K.E. Prehoda, S.N. Loh, and J.L. Markley,
"Modeling Volume Changes in Proteins using Partial Molar Volumes of Model
Compounds," In Techniques in Protein Chemistry VII (D.R.
Marshak, Ed.), Academic Press, New York, pp 433-438 (1996). |
|
| |
|
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| |
K.E. Prehoda and J.L. Markley, "Use of Partial
Molar Volumes of Model Compounds in the Interpretation of High-Pressure
Effects on Proteins," In High-Pressure Effects in Molecular
Biophysics and Enzymology (J.L. Markley, C. A. Royer, and D. Northrop,
Eds.), Oxford University Press, pp. 33-43 (1996). |
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| |
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| |
D.M. Truckses, R.R. Somoza, K.E. Prehoda, and J.L.
Markley, "Coupling between cis/trans Proline Isomerization
and Protein Stability in Staphylococcal Nuclease," Protein Sci.
5, 1907-1916 (1996). |
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| |
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| |
G.A.J. Vidugiris, D.M. Truckses, J.L. Markley, and
C.A. Royer, "High-Pressure Denaturation of Staphylococcal Nuclease Proline
to Glycine Substitution Mutants," Biochemistry 35, 3857-3864
(1996). |
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| |
B. Xia, H. Cheng, V. Bandarian, G.H. Reed, and
J.L. Markley, "Human Ferredoxin: Overproduction in Escherichia
coli, Reconstitution in vitro, and Spectroscopic Studies of
Iron-Sulfur Cluster Ligand Cysteine-to-Serine Mutants,"
Biochemistry 35, 9488-9495 (1996). |
|
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| |
B. Xia, H. Cheng, Y.K. Chae, L. Skjeldal, W.M.
Westler, and J.L. Markley, "Iron-Sulfur Proteins: Investigations of
Hyperfine-Shifted Hydrogen, Carbon, and Nitrogen Resonances," In
NMR as a Structural Tool For Macromolecules: Current Status and Future
Directions (B. D. Nageswara Rao and M. D. Kemple, Eds.), Plenum Press,
pp. 251-274 (1996).
|
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| |
Z. Zolnai, N. Juranic, J.L. Markley, and S.
Macura, "Zooming: a Practical Strategy for Improving the Quality of
Multidimensional NMR Spectra," J. Magn. Reson. Ser. A. 119,
53-64 (1996). |
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1995 |
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| |
B.M. Burkhart, B. Ramakrishnan, H. Yan, R.J.
Reedstrom, J.L. Markley, N.A. Straus, and M. Sundaralingam, "Molecular
Structure of the Trigonal Form of Recombinant Oxidized Flavodoxin from
Anabaena 7120 at 1.40 A Resolution," Acta. Crystallogr. Ser.
D. 51, 318-330 (1995). |
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| |
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| |
Y.K. Chae and J.L. Markley, "Analysis of the
Hyperfine-Shifted Nitrogen-15 Resonances of the Oxidized Form of
Anabaena 7120 Heterocyst Ferredoxin," Biochemistry
34, 188-193 (1995). |
|
| |
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|
| |
Y.K. Chae and J.L. Markley, "Mutagenesis Studies
of Anabaena 7120 [2Fe-2S] Ferredoxins: Physical and Chemical
Characteristics of Hybrid Vegetative/Heterocyst Sequences," In
Photosynthesis: from Light to Biosphere (P. Mathis, Ed.), Kluwer
Academic Publishers, Vol. II, 633-638 (1995).
|
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| |
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| |
Y.K. Chae, B. Xia, H. Cheng, B.-H. Oh, L.
Skjeldal, W.M. Westler, and J.L. Markley, "Multinuclear Magnetic Resonance
and Mutagenesis Studies of Structure-Function Relationships in [2Fe-2S]
Ferredoxins," In Nuclear Magnetic Resonance of Paramagnetic
Proteins (G. N., LaMar, Ed.), Nato ASI Series C, Vol. 457, Kluwer,
Dordrecht, pp 297-317 (1995). |
|
| |
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| |
H. Cheng and J.L. Markley, "NMR Spectroscopic
Studies of Paramagnetic Proteins: Iron-Sulfur Proteins," Ann. Rev.
Biophys. Biomol. Structure 24, 209-237 (1995). |
|
| |
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| |
H. Cheng, W.M. Westler, B. Xia, B.-H. Oh, and J.L.
Markley, "Protein Expression, Selective Isotopic Labeling, and Analysis of
Hyperfine-Shifted NMR Signals of Anabaena 7120 Vegetative [2Fe-2S]
Ferredoxin," Arch. Biochem. Biophys 316, 619-634 (1995).
|
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| |
R.A. Chylla and J.L. Markley, "Theory and
Application of the Maximum Likelihood Principle to NMR Parameter
Estimation of Multidimensional NMR Data," J. Biomol. NMR 5,
245-258 (1995). |
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| |
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| |
A.S. Edison, J.L. Markley, and F. Weinhold, "Ab
Initio Calculations of Protium/Deuterium Fractionation Factors in
O2H5+ Clusters," J. Phys. Chem. 99, 8013-8016 (1995).
|
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| |
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| |
A.S. Edison, F. Weinhold, and J.L. Markley,
"Theoretical Studies of Protium/Deuterium Fractionation Factors and
Cooperative Hydrogen Bonding in Peptides," J. Am. Chem. Soc.
117, 9619-9624 (1995). |
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| |
C.G. Hoogstraten, S. Choe, W.M. Westler, and J.L.
Markley, "Comparison of the Accuracy of Protein Solution Structures
Derived from Conventional and Network-Edited NOESY Data," Protein
Science 4, 2289-2299 (1995).
|
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| |
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| |
C.G. Hoogstraten, W.M. Westler, S. Macura, and
J.L. Markley, "NOE Measurements in the Absence of Spin Diffusion:
Application to Methylene Groups in Proteins and Effects on Local
Structural Parameters," J. Am. Chem. Soc. 117, 5610-5611
(1995); correction, loc. cit. p. 8885.
|
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C.G. Hoogstraten, W.M. Westler, E.S. Mooberry, S.
Macura, and J.L. Markley, "Analysis of Transverse Cross Relaxation in
Proteins within a Simplified Relaxation Submatrix: BD-ROESY," J. Magn.
Reson. Ser. B 109, 76-79 (1995).
|
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J.K. Hurley, M.S. Caffrey, J.L. Markley, H. Cheng,
B. Xia, Y.K. Chae, H.M. Holden, and G. Tollin, "Mutations of Surface
Residues in Anabaena Vegetative and Heterocyst Ferredoxin that
Affect Thermodynamic Stability as Determined by Guanidine Hydrochloride
Denaturation," Protein Sci. 4, 58-64 (1995). |
|
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| |
D. Ming, J.L. Markley, and G. Hellekant,
"Quantifying Sulfhydryl Groups of Cysteinyl Residues in Peptides and
Proteins," BioTechniques 18, 808-810 (1995). |
|
| |
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| |
J.A. Navarro, M. Hervas, C. Genzor, G. Cheddar,
M.F. Fillat, M.A. de la Rosa, C. Gomez-Moreno, H. Cheng, B. Xia, Y.K.
Chae, H. Yan, B. Wong, N. Straus, J.L. Markley, J.K. Hurley, and G.
Tollin, "Site-Specific Mutagenesis Demonstrates that the Structural
Requirements for Efficient Electron Transfer in Anabaena Ferredoxin
and Flavodoxin are Highly Dependent on the Reaction Partner: Kinetic
Studies with Photosystem I, Ferredoxin:NADP+ Reductase and Cytochrome
c," Arch. Biochem. Biophys. 321, 229-238 (1995).
|
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| |
J.B. Pearson, J.-F. Wang, J.L. Markley, H.-b. Le,
and E. Oldfield, "Protein Structure Refinement Using Carbon-13 Nuclear
Magnetic Resonance Spectroscopic Chemical Shifts and Quantum Chemistry,"
J. Am. Chem. Soc. 117, 8823-8829 (1995).
|
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T.C. Pinkerton, W. Jeffrey-Howe, E.L. Ulrich, J.
P. Comiskey, J. Haginaka, T. Murashima, W.F. Walkenhorst, W.M. Westler,
and J.L. Markley, "Protein Binding Chiral Discrimination of HPLC
Stationary Phases made with Whole, Fragmented, and Third Domain Turkey
Ovomucoid," Anal. Chem. 67, 2354-2367 (1995). |
|
| |
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| |
J. Schleucher, J.L. Markley, and T.D. Sharkey,
"Hydrogen Isotope Ratios of Plant Metabolites," In
Photosynthesis: from Light to Biosphere (P. Mathis, Ed.), Kluwer
Academic Publishers, Vol. V, 1009-1012 (1995). |
|
| |
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| |
G.J.A. Vidugiris. J.L. Markley, and C.A. Royer,
"Evidence for a Molten Globule-Like Transition State in Protein Folding
from Determination of Activation Volumes," Biochemistry 34,
4909-4912 (1995). |
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| |
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| |
D.S. Wishart, C.G. Bigam, J. Yao, F. Abildgaard,
H. J. Dyson, E. Oldfield, J.L. Markley, and B.D. Sykes, "13-C and 15-N
Chemical Shift Referencing in Biomolecular NMR," J. Biomol. NMR
6, 135-140 (1995). |
|
| |
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| |
B. Xia, H. Cheng, L. Skjeldal, V.M. Coghlin, L.E.
Vickery, and J.L. Markley, "Multinuclear Magnetic Resonance and
Mutagenesis Studies of the Histidine Residues of Human Mitochondrial
Ferredoxin," Biochemistry 34, 180-187 (1995).
|
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| |
B. Xia, W.M. Westler, H. Cheng, J. Meyer, J.-M.
Moulis, and J.L. Markley, "Detection and Classification of
Hyperfine-shifted 1-H, 2-H, and 15-N Resonances from the Four Cysteines
that Ligate Iron in Oxidized and Reduced Clostridium pasteurianum
Rubredoxin," J. Am. Chem. Soc. 117, 5347-5350 (1995).
|
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H. Zhao, W.M. Westler and J.L. Markley, "Precise
Determination of T1 Relaxation Values by a Method in which Pairs of
Non-Equilibrium Magnetizations are Measured across a Constant Relaxation
Period," J. Magn. Reson. Ser. A 112, 139-143 (1995).
|
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| |
Z. Zolnai, N. Juranic, J.L. Markley, and S.
Macura, "Magnetization Exchange Network Editing: Mathematical Principles
and Experimental Demonstration," Chem. Phys. 200, 161-179
(1995). |
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1994 |
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| |
Y.K. Chae, F. Abildgaard, E.S. Mooberry, and J.L.
Markley, "Multinuclear, Multidimensional NMR Studies of Anabaena
7120 Heterocyst Ferredoxin. Sequence-Specific Resonance Assignments and
Secondary Structure of the Oxidized Form in Solution," Biochemistry
33, 3287-3295 (1994). |
|
| |
|
|
| |
H. Cheng, B. Xia, Y.K. Chae, W.M. Westler, and
J.L. Markley, "Magnetic Resonance Studies of Isotopically Labeled
Paramagnetic Proteins: [2Fe-2S] Ferredoxins," In Stable Isotope
Applications in Biomolecular Structure and Mechanisms (J. Trewhella,
T. Cross, & C. J. Unkefer, Eds.), Los Alamos National Laboratory, Los
Alamos, pp 171-188 (1994).
|
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| |
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|
| |
H. Cheng, B. Xia, G.H. Reed, and J.L. Markley,
"Optical, EPR, and 1-H NMR Spectroscopy of Serine-Ligated [2Fe-2S]
Ferredoxins Produced by Site-Directed Mutagenesis of Cysteine Residues in
Recombinant Anabaena 7120 Vegetative Ferredoxin,"
Biochemistry 33, 3155-3164 (1994).
|
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| |
A.S. Edison, F. Abildgaard, W.M. Westler, E.S.
Mooberry, and J.L. Markley, "Practical Introduction to the Theory and
Implementation of Multinuclear, Multidimensional NMR Experiments,"
Methods. Enzymol. 239, 3-79 (1994). |
|
| |
|
|
| |
A.S. Edison, J.L. Markley, and F. Weinhold,
"Calculations of One-, Two, and Three-Bond Nuclear Spin-Spin Couplings in
a Model Peptide and Experimental Correlations with Experimental Data,"
J. Biomol. NMR 4, 519-542 (1994). |
|
| |
|
|
| |
A.S. Edison, F. Weinhold, W.M. Westler, and J.L.
Markley, "Estimates of phi and psi Torsion Angles in
Proteins from One-, Two-, and Three-Bond Nuclear Spin-Spin Couplings:
Application to Staphylococcal Nuclease," J. Biomol. NMR 4,
543-551 (1994). |
|
| |
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|
| |
M. Ghassemian, B. Wong, F. Ferreira, J.L. Markley,
and N. Straus, "Cloning, Sequencing and Transcriptional Studies of the
Genes for Cytochrome c-553 and Plastocyanin from Anabaena
sp. PCC 7120," Microbiology 140, 1151-1159 (1994).
|
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| |
C. Gomez-Moreno, M. Medina, J.K. Hurley, M.A.
Cusanovich, J.L. Markley, H. Cheng, B. Xia, Y.K. Chae, and G. Tollin,
"Protein Engineering for the Elucidation of the Mechanism of Electron
Transfer in Redox Proteins," Biochem. Soc. Trans. 22,
796-800 (1994). |
|
| |
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| |
H.M. Holden, B.L. Jacobson, J.K. Hurley, G.
Tollin, B.-H. Oh, L. Skjeldal, Y.K. Chae, H. Cheng, B. Xia, and J.L.
Markley, "Structure-Function Studies of [2Fe-2S] Ferredoxins," J.
Bioeng. Biomemb. 26, 67-88 (1994). |
|
| |
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| |
J.K. Hurley, Z. Salamon, T.E. Meyer, J. C. Fitch,
M. A. Cusanovich, G. Tollin, H. Cheng, B. Xia, Y.K. Chae, J.L. Markley, M.
Medina, and C. Gomez-Moreno, "Structure-Function Relationships in
Ferredoxin: Site-Directed Mutagenesis and Time-Resolved Absorption
Spectroscopy Applied to the Ferredoxin:Ferredoxin NADP+ Reductase
Interaction," In Flavins and Flavoproteins 1993 (K. Yagi,
Ed.), Walter de Gruyter, Berlin, pp 435-438 (1994).
|
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| |
S. Kornguth, M.E. Anderson, J.L. Markley, and A.
Shedlovsky, "Near-Microscopic Magnetic Resonance Imaging of the Brains of
Phenylalanine Hydroxylase-Deficient Mice, Normal Littermates, and of
Normal BALB/c Mice at 9.4 Tesla," Neuroimage 1, 220-229
(1994). |
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| |
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| |
A.M. Krezel, P. Darba, A.D. Robertson, J. Fejzo,
S. Macura, and J.L. Markley, "Solution Structure of Turkey Ovomucoid Third
Domain as Determined from Nuclear Magnetic Resonance Data," J. Mol.
Biol. 242, 203-214 (1994).
|
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| |
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| |
S.N. Loh, and J.L. Markley, "Hydrogen Bonding in
Proteins as Studied by Amide Hydrogen D/H Fractionation Factors:
Application to Staphylococcal Nuclease," Biochemistry 33,
1029-1036 (1994). |
|
| |
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|
| |
S. Macura, W.M. Westler, and J.L. Markley,
"Two-Dimensional Exchange Spectroscopy of Proteins," Methods
Enzymol. 239, 106-144 (1994).
|
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| |
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| |
S.N. Loh, K.E. Prehoda, J. Wang, and J.L. Markley,
"Measuring Global and Local Structural Free Energy Changes in
Staphylococcal Nuclease by NMR-Observed Hydrogen Exchange," In
Techniques in Protein Chemistry V (J. W. Crabb, Ed.), Academic
Press, New York, pp 431-438 (1994). |
|
| |
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|
| |
S. Macura, J. Fejzo, W.M. Westler, and J.L.
Markley, "Influence of Slow Internal Motion in Proteins on
Cross-Relaxation Rates Determined by Two-Dimensional Exchange
Spectroscopy," Bull. Magn. Reson. 16, 73-93 (1994).
|
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| |
|
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| |
J.L. Markley, A.P. Hinck, S.N. Loh, K.E. Prehoda,
D.M. Truckses, W.F. Walkenhorst, and J. Wang, "Case Study of Protein
Structure, Stability, and Function: NMR Investigations of the Proline
Residues in Staphylococcal Nuclease," Pure & Appl. Chem.
66, 65-69 (1994). |
|
| |
|
|
| |
E.S. Mooberry, F. Abildgaard, and J.L. Markley,
"Modifications of an Older Model NMR Console for the Collection of
Multinuclear, Multidimensional Spectral Data," Methods. Enzymol.
239, 247-256 (1994). |
|
| |
|
|
| |
J.B. Olson, Jr., and J.L. Markley, "Evaluation of
an Algorithm for the Automated Sequential Assignment of Protein Backbone
Resonances: A Demonstration of the Connectivity Tracing Assignment Tools
(CONTRAST) Software Package," J. Biomol. NMR 4, 385-410
(1994).
|
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| |
W.F. Walkenhorst, A.M. Krezel, G.I. Rhyu, and J.L.
Markley, "Solution Structure of Reactive-Site Hydrolyzed Turkey Ovomucoid
Third Domain by Nuclear Magnetic Resonance and Distance Geometry Methods,"
J. Mol. Biol. 242, 215-230 (1994). |
|
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1993 |
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| |
M. E. Anderson, J.L. Markley, Arus, C. and M. C.
Chobanian, "Perifusion Loop-Gap Resonator NMR Probe for Aerobic Cell
Suspensions," Magn. Reson. Med. 29, 563-566
(1993). |
|
| |
|
|
| |
I.-J.L. Byeon, H. Yan, A.S. Edison, E.S. Mooberry,
F. Abildgaard, J.L. Markley, and M.D. Tsai, "Mechanism of Adenylate
Kinase. 1-H, 13-C, and 15-N NMR Assignments, Secondary Structure, and
Substrate Binding Sites," Biochemistry 32, 12508-12521
(1993). |
|
| |
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|
| |
M.E. Cabanas, J. Alonso, C. Arus, M.E. Anderson,
W.M. Westler, and J.L. Markley, "A Versatile Perifusion System for the NMR
Spectroscopy of Bovine Retina. Assignment of Resonances and Effect of
Ischemia," Exp Eye Res. 57, 669-678 (1993).
|
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| |
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| |
R.A. Chylla and J.L. Markley, Simultaneous Base
Point Correction and Signal Recognition in Multidimensional NMR Spectra,"
J. Magn. Reson. Ser. B 102, 148-154 (1993). |
|
| |
|
|
| |
R.A. Chylla, and J.L. Markley, "Improved Frequency
Resolution in Constant-Time Experiments by Multidimensional Bayesian
Analysis," J. Biomol. NMR 3, 515-533 (1993). |
|
| |
|
|
| |
A.S. Edison, J.L. Markley, and F. Weinhold,
"Calculations of Nuclear Spin-Spin Coupling Constants with Ab
Initio Molecular Orbital Wavefunctions," J. Phys. Chem.
97, 11657-11665 (1993). |
|
| |
|
|
| |
D. D. Gilboe, D. Kintner, M. E. Anderson, J. H.
Fitzpatrick, S. E. Emoto, and J.L. Markley, "Inorganic Phosphate
Compartmentation in the Normal Isolated Canine Brain," J.
Neurochem. 60, 2192-2203 (1993). |
|
| |
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| |
J. Haginaka, T. Murashima, T.C., Pinkerton, J.P.
Comiskey, E.L. Ulrich, J.L. Markley, and W.F. Walkenhorst,
"Enantioselectivity of Ovomucoid Bonded-Phase HPLC Columns Produced with
Isolated Domains," Kuromatogurafi 14, 100-101 (1993).
|
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| |
A.P. Hinck, E.S. Eberhardt, and J.L. Markley, "NMR
Strategy for Elucidation of Xaa-Pro Peptide Bond Configurations in
Proteins: Mutants of Staphylococcal Nuclease with Altered Configuration at
Proline-117," Biochemistry 32, 11810-11818 (1993).
|
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| |
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| |
A. P. Hinck, W. F. Walkenhorst, W.M. Westler, S.
Choe, and J.L. Markley, "Overexpression and Purification of Avian
Ovomucoid Third Domains in Escherichia coli," Protein Eng.
6, 221-227 (1993). |
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| |
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|
| |
C.G. Hoogstraten, W.M. Westler, S. Macura, and
J.L. Markley, "Improved Measurement of Longer Proton-Proton Distances in
Proteins by Relaxation Network Editing," J. Magn. Reson. Ser. B
102, 232-235 (1993).
|
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| |
|
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| |
J.K. Hurley, H. Cheng, B. Xia, J.L. Markley, M.
Medina, C. Gomez-Moreno, and G. Tollin, "An Aromatic Amino Acid is
Required at Position 65 in Anabaena Ferredoxin for Rapid Electron
Transfer to Ferredoxin:NADP+ Reductase," J. Am. Chem. Soc.
115, 11698-11701 (1993).
|
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| |
|
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| |
J. K. Hurley, Z. Salamon, T.E. Meyer, J.C. Fitch,
M.A. Cusanovich, J.L. Markley, H. Cheng, B. Xia, Y.K. Chae, M. Medina, C.
Gomez-Moreno, and G. Tollin, "Amino Acid Residues in Anabaena
Ferredoxin Crucial to Interaction with Ferredoxin-NADP+ Reductase:
Site-Directed Mutagenesis and Laser Flash Photolysis," Biochemistry
32, 9346-9354 (1993). |
|
| |
|
|
| |
B.L. Jacobson, Y.K. Chae, J.L. Markley, I.
Rayment, and H.M. Holden, "Molecular Structure of the Oxidized,
Recombinant, Heterocyst [2Fe-2S] Ferredoxin from Anabaena 7120
Determined to 1.7 A Resolution," Biochemistry 32, 6788-6793
(1993). |
|
| |
|
|
| |
S. N. Loh and J.L. Markley, "Measurement of Amide
Hydrogen D/H Fractionation Factors in Proteins by NMR Spectroscopy,"
In Techniques in Protein Chemistry IV, (R. Angeletti, Ed.),
Academic Press, New York, pp 517-524 (1993).
|
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| |
|
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| |
S.N. Loh, K.E. Prehoda, J. Wang, and J.L. Markley,
"Hydrogen Exchange in Unligated and Ligated Staphylococcal Nuclease,"
Biochemistry 32, 11022-11028 (1993). |
|
| |
|
|
| |
J.L. Markley, A.P. Hinck, S.N. Loh, K.E. Prehoda,
D.M. Truckses, W.F. Walkenhorst, and J. Wang, "Case Study of Protein
Structure, Stability, and Function: NMR Investigations of the Proline
Residues in Staphylococcal Nuclease," In Protein Structure
Function Relationship (Z.H. Zaidi, A. Abbasi, and D.L. Smith, Eds.),
TWEL Publishers, Karachi-Doncaster-Gaithersburg, pp 193-202 (1993).
|
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| |
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| |
J.L. Markley and M. Kainosho, "Stable Isotope
Labeling and Resonance Assignments in Larger Proteins," In NMR
of Biological Macromolecules: A Practical Approach, (G. C. K. Roberts,
Ed.), Oxford University Press, Oxford, 1993, pp 101-152. |
|
| |
|
|
| |
D. C. McCain, J. Croxdale, and J.L. Markley,
"Spatial Distribution of Chloroplast Water in Acer platanoides Sun
and Shade Leaves," Plant Cell and Environment 16, 727-733
(1993). |
|
| |
|
|
| |
C. Royer, A. P. Hinck, S. N. Loh, K. Prehoda, X.
Peng, J. Jonas, and J.L. Markley, "Effects of Amino Acid Substitutions on
the Pressure Denaturation of Staphylococcal Nuclease as Monitored by
Fluorescence and NMR Spectroscopy," Biochemistry 32,
5222-5232 (1993). |
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1992 |
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| |
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| |
Z. Dzakula, A.S. Edison, W.M. Westler, and J.L.
Markley, "Analysis of chi(1) Rotamer Populations from NMR Data by the
CUPID Method," J. Am. Chem. Soc. 114, 6200-6207 (1992).
|
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| |
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|
| |
Z. Dzakula, W.M. Westler, A.S. Edison and J.L.
Markley, "The 'CUPID' Method of Calculating the Continuous Probability
Distribution of Rotamers from NMR Data," J. Am. Chem. Soc.
114, 6195-6199 (1992).
|
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| |
|
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| |
J. Fejzo, W.M. Westler, J.L. Markley, S. Macura,
"Complete Elimination of Spin Diffusion from Selected Resonances in
Two-Dimensional Cross-Relaxation Spectra of Macromolecules by a Novel
Pulse Sequence (SNOESY)," J. Am. Chem. Soc. 114, 1523-1524
(1992).
|
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| |
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| |
A.L.P. Houseman, B.-H. Oh, M.C. Kennedy, C. Fan,
M.M. Werst, H. Beinert, J.L. Markley, and B.M. Hoffman, "14,15-N, 13-C,
TFe, 1,2H Q-band ENDOR Study of Fe-S Proteins with Clusters that Have
Endogenous Sulfur Ligands," Biochemistry 31, 2073-2080
(1992).
|
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| |
|
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| |
B.L. Jacobson, Y.K. Chae, H. Böhme, J.L. Markley,
and H.M. Holden, "Crystallization and Preliminary Analysis of Oxidized,
Recombinant, Heterocyst [2Fe-2S] Ferredoxin from Anabaena 7120,"
Arch. Biochem. Biophys. 294, 297-281 (1992). |
|
| |
|
|
| |
S. Kornguth, E. Bersu, M.E. Anderson, and J.
Markley, "Correlation of Increased Levels of Class I MHC H-2K(k) in the
Placenta of Murine Trisomy 16 Conceptuses with Structural Abnormalities
Revealed by Magnetic Resonance Microscopy," Tetralogy 45,
383-391 (1992).
|
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| |
S. Macura, J. Fejzo, C. G. Hoogstraten, W.M.
Westler, and J.L. Markley, "Topological Editing of Cross-Relaxation
Networks," Israel J. Chem. 32, 245-256 (1992).
|
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| |
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| |
D.C. McCain and J.L. Markley, "In vivo
Study of Chloroplast Volume Regulation," Biophys. J. 61,
1207-1212 (1992). |
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| |
|
|
| |
D. C. McCain and J.L. Markley, "A Nuclear Magnetic
Resonance Imaging Technique Designed for Studies of Water in Plant
Leaves," J. Struct. Biol. 108, 195-201 (1992). |
|
| |
|
|
| |
E. S. Mooberry, A. S. Edison, F. Abildgaard, J.L.
Markley, I.-J. Byeon, and M.-D. Tsai, "Modification of a Bruker AM-600
Spectrometer for Double and Triple Resonance Three- and Four-Dimensional
Experiments Illustrated with Chicken Adenylate Kinase Resonance
Assignments," In Spectroscopy and Structure of Molecules and
Nuclei, N. R. Johnson, W. N. Shelton, and M. El-Sayed, eds., World
Scientific, Singapore, pp. 375-380, 1992.
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S. T. Rao, F. Shaffie, C. Yu, K. A. Satyshur, B.
J. Stockman, J.L. Markley, and M. Sundaralingam, "Structure of the
Oxidized Long Chain Flavodoxin from Anabaena 7120 at 2 A
Resolution," Protein Science 1, 1413-1427 (1992).
|
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| |
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| |
B.J. Stockman and J.L. Markley, "NMR Analysis of
Ligand Binding," Current Opinion Structural Biology 2, 52-56
(1992). |
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| |
|
|
| |
J. Wang, A. P. Hinck, S. N. Loh, D. M. LeMaster,
and J.L. Markley, "Solution Studies of Staphylococcal Nuclease H124L. 2.
1-H, 13-C, and 15-N Chemical Shift Assignments for the Unligated Enzyme
and Analysis of Chemical Shift Changes that Accompany Formation of the
Nuclease-3',5'-Thymidine Bisphosphate-Calcium Ternary Complex,"
Biochemistry 31, 921-936 (1992). |
|
| |
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|
| |
J. Wang, E.S. Mooberry, W. F. Walkenhorst, and
J.L. Markley, "Solution Studies of Staphylococcal Nuclease H124L. 1.
Backbone 1-H and 15-N Resonances and Secondary Structure of the Unligated
Enzyme as Identified by Three-Dimensional NMR Spectroscopy,"
Biochemistry 31, 911-920 (1992). |
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1991 |
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| |
A.S. Edison, W.M. Westler, and J.L. Markley,
"Elucidation of Protein Spin Systems and Determination of Heteronuclear
Coupling Constants by Carbon-Proton-Proton Three-Dimensional NMR," J.
Magn. Reson. 92, 434-438 (1991). |
|
| |
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| |
J. Fejzo, A.M. Krezel, W.M. Westler, S. Macura,
and J.L. Markley, "Direct Cross-Relaxation NOESY (D.NOESY). A Method for
Removing Spin-Diffusion Cross Peaks from Two-Dimensional NOE Spectra of
Macromolecules," J. Magn. Reson. 92, 651-657 (1991).
|
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| |
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| |
J. Fejzo, A. M. Krezel, W.M. Westler, S. Macura
and J.L. Markley, "Refinement of the NMR Solution Structure of a Protein
to Remove Distortions Arising from Neglect of Internal Motion,"
Biochemistry 30, 3807-3811 (1991).
|
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| |
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| |
J. Fejzo, W.M. Westler, S. Macura, and J.L.
Markley, "Strategies for Eliminating Unwanted Cross-Relaxation and
Coherence Transfer Effects from Two-Dimensional Chemical Exchange
Spectra," J. Magn. Reson. 92, 20-29 (1991). |
|
| |
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| |
J. Fejzo, W.M. Westler, S. Macura, and J.L.
Markley, "Elimination of Chemical Exchange Mediated Spin Diffusion from
Exchange Spectra of Macromolecules. Exchange Decoupled NOESY (XD-NOESY),"
J. Magn. Reson. 92, 195-202 (1991). |
|
| |
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| |
S.N. Loh, C.W. McNemar, and J.L. Markley,
"Detection and Kinetic Characterization of a Novel Proline Isomerism in
Staphylococcal Nuclease by NMR Spectroscopy," In Techniques in
Protein Chemistry II, (J.J. Villafranca, Ed.), Academic Press, New
York, pp 275-282 (1991).
|
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| |
|
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| |
J.L. Markley, "Stable-Isotope-Assisted
Multinuclear NMR Investigations of Proteins," In Proteins -
Structure, Dynamics and Design, (V. Renugopalakrishnan, P. R. Carey,
I. C. P. Smith, S.-G. Huang, and A. C. Storer, eds.), ESCOM, Leiden, pp.
29-39 1991.
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J.L. Markley, P. Darba, J. Fejzo, A.M. Krezel, S.
Macura, C.W. McNemar, E.S. Mooberry, B.R. Seavey, W.M. Westler, and Z.
Zolnai, "Computational Aspects of Multinuclear NMR Spectroscopy of
Proteins at NMRFAM," In Computational Aspects of the Study of
Biological Macromolecules by Nuclear Magnetic Resonance Spectroscopy,
(J. C. Hoch, F. M. Poulsen, and C. Redfield, Eds.), NATO ASI Series,
Plenum Press, New York, pp 39-50 (1991). |
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| |
J.L. Markley, E.A. Farr, and B. R. Seavey,
"Appendix: Check List for Protein NMR Data to be Submitted for Publication
of for Database Inclusion," J. Biomol. NMR 1, 231-236
(1991).
|
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| |
D.C. McCain, W.M. Westler, and J.L. Markley, "A
Two-Dimensional Technique for Chemical Shift Resolution in One-Dimensional
NMR Images," J. Magn. Reson. 93, 181-183 (1991).
|
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| |
W.R. Rypniewski, D.R. Breiter, M.M. Benning G.
Wesenberg, B.-H. Oh, J.L. Markley, I. Rayment, and H.M. Holden,
"Crystallization and Structure Determination to 2.5 A Resolution of the
Oxidized 2Fe-2S Ferredoxin Isolated from Anabaena 7120,"
Biochemistry 30, 4126-4131 (1991). |
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| |
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| |
B.R. Seavey, E.A. Farr, W.M. Westler, and J.L.
Markley, "A Relational Database for Sequence-Specific Protein NMR Data,"
J. Biomol. NMR 1, 217-230 (1991). |
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| |
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| |
L. Skjeldal, J.L. Markley, V.M. Coghlan, and L. E.
Vickery, "Hydrogen-1 NMR Spectra of Vertebrate [2Fe-2S] Ferredoxins.
Hyperfine Resonances Suggest Different Electron Delocalization Patterns
from Plant Ferredoxins," Biochemistry 30, 9078-9083 (1991).
|
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| |
L. Skjeldal, W.M. Westler, B.-H. Oh, A. M. Krezel,
H.M. Holden, B.L. Jacobson, I. Rayment, and J.L. Markley, "Two-Dimensional
Magnetization Exchange Spectroscopy of Anabaena 7120 Ferredoxin.
Nuclear Overhauser Effect and Electron Self-Exchange Cross Peaks from
Amino Acid Residues Surrounding the 2Fe-2S* Cluster," Biochemistry
30, 7363-7368 (1991).
|
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| |
B.J. Stockman, A.M. Krezel, J.B. Olson, E.S.
Mooberry, and J.L. Markley, "Flavin Binding Site Geometry in
Anabaena 7120 Flavodoxin. Progress in Determining the Flavodoxin
Solution Structure," In Flavins and Flavoproteins 1990, (B.
Curti, S. Ronchi, and G. Zanetti, Eds.) Walter de Gruyter, Berlin, pp
377-380 (1991). |
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1990 |
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| |
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| |
A.T. Alexandrescu, A.P. Hinck, and J.L. Markley,
"Coupling Between Local Structure and Global Stability of a Protein:
Mutants of Staphylococcal Nuclease," Biochemistry 29,
4516-4525 (1990). |
|
| |
|
|
| |
A.T. Alexandrescu, S.N. Loh, and J.L. Markley,
"Chemical Exchange Spectroscopy Based on Carbon-13. Applications to
Protein Folding and Enzymology," J. Magn. Reson. 87, 523-535
(1990).
|
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| |
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|
| |
J. Alonso, C. Arus, W.M. Westler, and J.L.
Markley, "Two-Dimensional Spectra of Intact Tissue: Homonuclear
Hartmann-Hahn Spectroscopy Provides Increased Sensitivity and Information
Content as Compared to COSY," Magn. Reson. Med. 15, 142-151
(1990). |
|
| |
|
|
| |
J. Fejzo, W.M. Westler, S. Macura, and J.L.
Markley, "Elimination of Cross-Relaxation Effects from Two-Dimensional
Chemical Exchange Spectra of Macromolecules," J. Am. Chem. Soc.
112, 2574-2577 (1990). |
|
| |
|
|
| |
J. Fejzo, Z. Zolnai, S. Macura, and J.L. Markley,
"Quantitative Evaluation of Two-Dimensional Cross-Relaxation NMR Spectra
of Proteins: Interproton Distances in Turkey Ovomucoid Third Domain,"
J. Magn. Reson. 88, 93-110 (1990). |
|
| |
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| |
A.P. Hinck, S.N. Loh, J. Wang, and J.L. Markley,
"Histidine-121 of Staphylococcal Nuclease. Correction of the Hd2 1-H NMR
Assignment and Reinterpretation of the Role this Residue Plays in
Conformational Heterogeneity of the Protein," J. Am. Chem. Soc.
112, 9031-9034 (1990).
|
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| |
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| |
S.E. Kornguth, M.E. Anderson, P. Turski, J.
Sorenson, H.I. Robins, J. Cohen, A. Rappe, and J.L. Markley, "Glioblastoma
Multiforme: MR Imaging at 1.5 and 9.4 T After Injection of
Polylysine-DTPA-Gd in Rats," Am. J. Neuro. Radiol. 11, 313-318
(1990). |
|
| |
|
|
| |
J.L. Markley, B.R. Seavey, A.T. Alexandrescu, P.
Darba, A.P. Hinck, S.N. Loh, C. W. McNemar, E.S. Mooberry, B.-H. Oh, B. J.
Stockman, J. Wang, W.M. Westler, M.H. Zehfus, and Z. Zolnai, "Multinuclear
Magnetic Resonance Spectroscopy of Proteins: Information Content, Data
Extraction and Analysis, and Database Design," In Protein
Engineering. Protein Design in Basic Research, Medicine, and Industry
(M. Ikehara, T. Oshima, and K. Titani, Eds.), Springer Verlag, New York,
pp 285-290 (1990).
|
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| |
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| |
D.C. McCain and J.L. Markley, "Distinguishing
Chloroplast Water from Nonchloroplast Water in One-Dimensional NMR
Microscope Images of Plant Leaves," J. Magn. Reson. 89,
410-414 (1990). |
|
| |
|
|
| |
B.-H. Oh and J.L. Markley, "Multinuclear Magnetic
Resonance Studies of the 2Fe-2S* Ferredoxin from Anabaena sp.
strain PCC 7120: 1. Hydrogen-1 Resonance Assignments and Secondary
Structure in Solution of the Oxidized Form," Biochemistry
29, 3993-4004 (1990).
|
|
| |
|
|
| |
B.-H. Oh and J.L. Markley, "Multinuclear Magnetic
Resonance Studies of the 2Fe-2S* Ferredoxin from Anabaena sp.
strain PCC 7120: 3. Detection and Characterization of Hyperfine-Shifted
Nitrogen-15 and Hydrogen-1 Resonances of the Oxidized Form,"
Biochemistry 29, 4012-4017 (1990). |
|
| |
|
|
| |
B.-H. Oh, E.S. Mooberry, and J.L. Markley,
"Multinuclear Magnetic Resonance Studies of the 2Fe-2S* Ferredoxin from
Anabaena sp. strain PCC 7120: 2. Sequence-Specific Carbon-13 and
Nitrogen-15 Resonance Assignments of the Oxidized Form,"
Biochemistry 29, 4004-4011 (1990). |
|
| |
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|
| |
K.E. Paulsen, M.T. Stankovich, B.J. Stockman, and
J.L. Markley, "Redox and Spectral Properties of Flavodoxins from
Anabaena 7120," Arch. Biochem. Biophys. 280, 68-73
(1990). |
|
| |
|
|
| |
A.D. Robertson and J.L. Markley, "Methods for
Proton Resonance Assignment of Proteins," Biol. Magn. Reson.
9, 155-176 (1990).
|
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| |
|
|
| |
A.D. Robertson, G.I. Rhyu, W.M. Westler, and J.L.
Markley, "Assignment of the Carbon-13 NMR Spectra of Virgin and
Reactive-Site Modified Turkey Ovomucoid Third Domain," Biopolymers
29, 461-467 (1990).
|
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| |
|
|
| |
L. Skjeldal, W.M. Westler, and J.L. Markley,
"Detection and Characterization of Hyperfine Shifted Resonances in the
Proton NMR Spectrum of Anabaena 7120 Ferredoxin at High Magnetic
Fields," Arch. Biochem. Biophys. 278, 482-485 (1990).
|
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| |
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| |
B.J. Stockman, A.M. Krezel, J.L. Markley, K.G.
Leonhardt, and N.A. Straus, "Hydrogen-1, Carbon-13, and Nitrogen-15 NMR
Spectroscopy of Anabaena 7120 Flavodoxin: Assignment of B-Sheet and
Flavin Binding-Site Resonances and Analysis of Protein-Flavin
Interactions," Biochemistry 29, 9600-9609 (1990).
|
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| |
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|
| |
B.J. Stockman and J.L. Markley, "Stable-Isotope
Assisted Protein NMR Spectroscopy in Solution," In Advances in
Biophysical Chemistry, Vol. 1, pp. 1-46 (Bush, C. A., Ed.), JAI Press
Inc., Greenwich, Connecticut (1990). |
|
| |
|
|
| |
J. Wang, D.M. LeMaster, and J.L. Markley,
"Two-Dimensional 1-H NMR Studies of Staphylococcal Nuclease: 1. Solution
Structure of the (Nuclease H124L).Thymidine-3',5'-bisphosphate.Ca2+
Ternary Complex," Biochemistry 29, 88-101 (1990). |
|
| |
|
|
| |
J. Wang, A.P. Hinck, S.N. Loh, and J.L. Markley,
"Two-Dimensional 1-H NMR Studies of Staphylococcal Nuclease: 2.
Sequence-Specific Assignments of Carbon-13 and Nitrogen-15 Signals from
the (Nuclease H124L).Thymidine-3',5'-bisphosphate.Ca2+ Ternary Complex,"
Biochemistry 29, 102-113 (1990). |
|
| |
|
|
| |
J. Wang, A.P. Hinck, S.N. Loh, and J.L. Markley,
"Two-Dimensional NMR Studies of Staphylococcal Nuclease: Evidence for
Conformational Heterogeneity from Hydrogen-1, Carbon-13, and Nitrogen-15
Spin System Assignments of Aromatic Amino Acids in the (Nuclease
H124L).Thymidine-3',5'-Bisphosphate.Ca(2+) Ternary Complex,"
Biochemistry 29, 4242-4253 (1990).
|
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| |
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|
| |
M.H. Zehfus, M.D. Reily, E.L. Ulrich, W.M.
Westler, and J.L. Markley, "1-H, 13-C, and 15-N Resonance Assignments for
a Ferrocytochrome c553 Heme by Multinuclear NMR Spectroscopy,"
Arch. Biochem. Biophys. 276, 369-373 (1990).
|
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| |
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|
| |
Z. Zolnai, S. Macura, and J.L. Markley, "Hilbert
Transformation of Two- and Three-Dimensional NMR Data Reduces Computer
Memory Requirements and Saves Processing Time," J. Magn. Reson.
89, 94-101 (1990).
|
|
| |
|
|
| |
Z. Zolnai, W.M. Westler, E.L. Ulrich, and J.L.
Markley, "Drafting Table and Lightbox Software for Multidimensional NMR
Spectral Analysis (PIXI). The Personal Computer Workstation," J. Magn.
Reson. 88, 511-522 (1990).
|
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| |
1989 |
|
| |
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|
| |
A.T. Alexandrescu, E.L. Ulrich, and J.L. Markley,
"Hydrogen-1 NMR Evidence for Three Interconverting Forms of Staphylococcal
Nuclease: Effects of Mutations and Solution Conditions on their
Distribution," Biochemistry 28, 204-211 (1989). |
|
| |
|
|
| |
J. Alonso, C. Arus, W.M. Westler, and J.L.
Markley, "Two-Dimensional Correlated Spectroscopy (COSY) of Intact Frog
Muscle. Spectral Pattern Characterization and Lactate Quantitation,"
Magn. Reson. Med. 11, 316-330 (1989). |
|
| |
|
|
| |
J. Fejzo, Z. Zolnai, S. Macura, and J.L. Markley,
"Analysis of Laboratory- Frame and Rotating-Frame Cross Relaxation in
Macromolecules," J. Magn. Reson. 82, 518-528 (1989).
|
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| |
|
|
| |
C.B. Grissom and J.L. Markley, "Staphylococcal
Nuclease Active Site Amino Acids: pH Dependence of Tyrosines and Arginines
by 13-C NMR and Correlation with Kinetic Studies," Biochemistry
28, 2116-2124 (1989). |
|
| |
|
|
| |
J.L. Markley, "Two-Dimensional NMR Spectroscopy of
Proteins in Solution: an Overview," Methods Enzymol. 176,
12-64 (1989). |
|
| |
|
|
| |
D.C. McCain, J. Croxdale and J.L. Markley,
"Thermal Damage to Chloroplast Envelope Membranes," Plant Physiol.
90, 606-609 (1989). |
|
| |
|
|
| |
D.C. McCain and J.L. Markley, "More Manganese
Accumulates in Maple Sun Leaves than in Shade Leaves," Plant
Physiol. 90, 1417-1421 (1989). |
|
| |
|
|
| |
E.S. Mooberry, B.-H. Oh, and J.L. Markley,
"Improvement of 13-C-15-N Chemical Shift Correlation Spectroscopy by
Implementing Time Proportional Phase Incrementation," J. Magn.
Reson. 85, 147-149 (1989). |
|
| |
|
|
| |
B.-H. Oh and J.L. Markley, "Complete Carbon-13
Resonance Assignments of Tryptophan in L-Lysyl-L-Tryptophyl-L-Lysine by
Single-Bond and Multiple-Bond Correlated Hydrogen-1-Carbon-13
Two-Dimensional NMR," Biopolymers 28, 1833-1837 (1989).
|
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| |
|
|
| |
B.-H. Oh, W.M. Westler, and J.L. Markley,
"Carbon-13 Spin System Directed Strategy for Assigning Cross Peaks in the
COSY Fingerprint Region of a Protein," J. Am. Chem. Soc.
111, 3083-3085 (1989). |
|
| |
|
|
| |
B.J. Stockman and J.L. Markley, "Methods in
Stable-Isotope-Assisted NMR Spectroscopy of Proteins," In
Protein Structure and Engineering (O. Jardetzky, Ed.) Plenum Press,
New York, pp 155-192 (1989).
|
|
| |
|
|
| |
B.J. Stockman, M.D. Reily, W.M. Westler, E.L.
Ulrich, and J.L. Markley, "Concerted Two-Dimensional NMR Approaches to
Hydrogen-1, Carbon-13, and Nitrogen-15 Resonance Assignments in Proteins,"
Biochemistry 28, 230-236 (1989).
|
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| |
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|
| |
E.L. Ulrich, J.L. Markley, and Y. Kyogoku,
"Creation of a Nuclear Magnetic Resonance Data Repository and Literature
Database," Prot. Seq. Data Anal. 2, 23-37 (1989).
|
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| |
|
|
| |
Z. Zolnai, S. Macura, and J.L. Markley, "Spline
Method for Correcting Baseplane Distortions in Two-Dimensional NMR
Spectra," J. Magn. Reson. 82, 496-504 (1989).
|
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| |
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| |
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| |
1988 |
|
| |
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| |
A.T. Alexandrescu, D.A. Mills, E.L. Ulrich, M.
Chinami, and J.L. Markley, "NMR Assignments of the Four Histidines of
Staphylococcal Nuclease in Native and Denatured States,"
Biochemistry 27, 2158-2164 (1988).
|
|
| |
|
|
| |
D.C. McCain, J. Croxdale, and J.L. Markley, "Water
is Allocated Differently to Chloroplasts in Sun and Shade Leaves,"
Plant Physiol. 86, 16-18 (1988).
|
|
| |
|
|
| |
D.C. McCain, E.L. Ulrich, and J.L. Markley,
"Internal Motions in Staphylococcal Nuclease," J. Magn. Reson.
80, 296-305 (1988). |
|
| |
|
|
| |
B.-H. Oh, W.M. Westler, P. Darba, and J.L.
Markley, "Protein Carbon-13 Spin Systems by a Single Two-Dimensional
Nuclear Magnetic Resonance Experiment," Science 240, 908-911
(1988).
|
|
| |
|
|
| |
G.I. Rhyu and J.L. Markley, "Two-Dimensional NMR
Studies of Kazal Proteinase Inhibitors. 2. Sequence-Specific Assignments
and Secondary Structure of Reactive Site-Modified Turkey Ovomucoid Third
Domain," Biochemistry 27, 2529-2539 (1988). |
|
| |
|
|
| |
A.D. Robertson, W.M. Westler, and J.L. Markley,
"Two-Dimensional NMR Studies of Kazal Proteinase Inhibitors. 1.
Sequence-Specific Assignments and Secondary Structure of Turkey Ovomucoid
Third Domain," Biochemistry 27, 2519-2529 (1988).
|
|
| |
|
|
| |
B.J. Stockman, W.M. Westler, P. Darba, and J.L.
Markley, "Detailed Analysis of Carbon-13 NMR Spin Systems in a Uniformly
Carbon-13 Enriched Protein: Flavodoxin from Anabaena 7120," J.
Am. Chem. Soc. 110, 4096-4097 (1988).
|
|
| |
|
|
| |
B.J. Stockman, W.M. Westler, E.S. Mooberry, and
J.L. Markley, "Flavodoxin from Anabaena 7120: Uniform 15-N
Enrichment and Hydrogen-1, Nitrogen-15, and Phosphorus-31 NMR
Investigations of the FMN Binding Site in the Reduced and Oxidized
States," Biochemistry 27, 136-142 (1988).
|
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| |
|
|
| |
W.M. Westler, M. Kainosho, H. Nagao, N. Tomonaga,
and J.L. Markley, "Two- Dimensional NMR Strategies for Carbon-Carbon
Correlations and Sequence-Specific Assignments in Carbon-13 Labeled
Proteins," J. Am. Chem. Soc. 110, 4093-4095 (1988).
|
|
| |
|
|
| |
W.M. Westler, B.J. Stockman, Y. Hosoya, Y. Miyake,
M. Kainosho, and J.L. Markley, "Correlation of Carbon-13 and Nitrogen-15
Chemical Shifts in Uniformly Labeled Proteins by Heteronuclear
Two-Dimensional NMR Spectroscopy," J. Am. Chem. Soc. 110,
6265-6258 (1988). |
|
| |
|
|
| |
Z. Zolnai, S. Macura, and J.L. Markley,
"Compression of NMR Data: Application to Two-Dimensional NMR Spectroscopy
and Imaging," J. Magn. Reson. 80, 60-70 (1988). |
|
| |
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| |
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| |
1987 |
|
| |
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|
| |
J.L. Markley, "Enzyme Nomenclature 1984," J.
Amer. Chem. Soc. 109, 7589 (1987). |
|
| |
|
|
| |
J.L. Markley, "One- and Two-dimensional NMR
Spectroscopic Investigations of the Consequences of Amino Acid
Replacements in Proteins," In Protein Engineering (Dale L.
Oxender, Ed.) New York: Alan R. Liss, 15-33 (1987). |
|
| |
|
|
| |
D.C. McCain and J.L. Markley, "Internal Motions of
the Three Hydroxymethyl Groups in Aqueous Sucrose," J. Magn. Reson.
73, 244-251 (1987).
|
|
| |
|
|
| |
B.J. Stockman and J.L. Markley, "Flavodoxin from
Anabaena 7120: Uniform 15-N Enrichment and Hydrogen-1, Nitrogen-15,
and Phosphorus-31 NMR Investigations of the FMN Binding Site in the
Reduced and Oxidized States," In Flavins and Flavoproteins,
(D.E. Edmondson and D.B. McCormick, Eds.) W. de Gruyter, Berlin, pp
275-278 (1987).
|
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| |
1986 |
|
| |
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| |
C. Arus, W.M. Westler, M. Bárány, and J.L.
Markley, "Observation of the Terminal Methyl Group in Fatty Acids of the
Linolenic Series by Means of a New 1-H NMR Pulse Sequence Providing
Spectral Editing and Solvent Suppression. Application to Excised Frog
Muscle and Rat Brain," Biochemistry 25, 3346-3351 (1986).
|
|
| |
|
|
| |
R. Krishnamoorthi, J.L. Markley, M.A. Cusanovich,
and C.T. Przysiecki, "Hydrogen-1 Nuclear Magnetic Resonance Investigation
of Clostridium pasteurianum Rubredoxin. Location and Assignment of
Resonances from the Coordinating Cysteinyl Residues," Biochemistry
25, 50-54 (1986). |
|
| |
|
|
| |
R. Krishnamoorthi, J.L. Markley, M.A. Cusanovich,
C.T. Przysiecki, and T.E. Meyer, "Hydrogen-1 Nuclear Magnetic Resonance
Investigation of High Potential Iron-Sulfur Proteins from
Ectothiorhodospira halophila and Ectothiorhodospira
vacuolata. 1. A Comparative Study of Hyperfine Shifted Resonances,"
Biochemistry 25, 60-67 (1986).
|
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| |
|
|
| |
J.L. Markley, T.M. Chan, R. Krishnamoorthi, and
E.L. Ulrich, "Nuclear Magnetic Resonance Studies of Structure-Function
Relationships in Iron-Sulfur Proteins," In Frontiers of
Iron-Sulfur Protein Research, (H. Matsubara et al. Eds.), Japan
Sci. Soc. Press, Tokyo/Springer-Verlag, Berlin, 167-181 (1986). |
|
| |
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|
| |
J.L. Markley, D.H. Croll, R. Krishnamoorthi, G.
Ortiz-Polo, W.M. Westler, W.C. Bogard, Jr., and M. Laskowski, Jr., "One-
and Two-Dimensional NMR Spectral Analysis of the Consequences of Single
Amino Acid Replacements in Proteins," J. Cellular Biochem.
30, 291-309 (1986). |
|
| |
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|
| |
D.C. McCain and J.L. Markley, "The Solution
Conformation of Sucrose: Concentration and Temperature Dependence,"
Carbohyd. Res. 152, 73-80 (1986).
|
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| |
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|
| |
D.C. McCain and J.L. Markley, "Rotational Spectral
Density Functions for Aqueous Sucrose: Experimental Determination Using
13-C NMR," J. Am. Chem. Soc. 108, 4259- 4264 (1986).
|
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| |
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|
| |
G. Ortiz-Polo, R. Krishnamoorthi, J.L. Markley,
D.H. Live, D.G. Davis, and D. Cowburn, "Natural Abundance 15-N NMR
Spectroscopy Studies of Turkey Ovomucoid Third Domain: Assignment of
Peptide 15-N Resonances to the Residues at the Reactive Site Region via
Proton-Detected Multiple Quantum Coherence," J. Magn. Res.
68, 303-310 (1986).
|
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| |
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|
| |
B. Tobias and J.L. Markley, "Carbon-13 Relaxation
of [13-C-1]Acetyl-Chymotrypsin Dissolved in a Cryosolvent at Subzero
Temperatures," J. Magn. Reson. 69, 381-385 (1986).
|
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| |
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| |
R. Virudachalam and J.L. Markley, "Nuclear
Magnetic Resonance Studies of Spherical Plant Viruses," Biophys. J.
49, 33-35 (1986).
|
|
| |
|
|
| |
Z. Zolnai, S. Macura, and J.L. Markley, "An
Efficient Method for Eliminating Noise in Two-Dimensional Nuclear Magnetic
Resonance Spectra," Computer Enhanced Spectroscopy 3,
141-145 (1986). |
|
| |
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| |
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| |
1985 |
|
| |
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| |
R. Virudachalam, M. Harrington, J.E. Johnson, and
J.L. Markley, "1-H, 13-C, and 31-P Nuclear Magnetic Resonance Studies of
Cowpea Mosaic Virus: Detection and Exchange of Polyamines and Dynamics of
the RNA," Virology 141, 43-50 (1985).
|
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| |
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| |
G.I. Rhyu, W.J. Ray, Jr., and J.L. Markley,
"Multinuclear Magnetic Resonance Studies of Metal Ion Binding Sites of
Phosphoglucomutase," Biochemistry 24, 2536- 2541 (1985).
|
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| |
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| |
R. Virudachalam, P.S. Low, P. Argos, and J.L.
Markley, "Turnip Yellow Mosaic Virus and its Empty Capsid have Thermal
Stabilities with Opposite pH Dependence: Differential Scanning Calorimetry
and 31-P Nuclear Magnetic Resonance Spectroscopy Studies," Virology
146, 213-220 (1985). |
|
| |
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|
| |
E.L. Ulrich, M.E. Girvin, W.A. Cramer, and J.L.
Markley, "Location and Mobility of Ubiquinones of Different Chain Length
in Artificial Membrane Vesicles," Biochemistry 24, 2501-2508
(1985). |
|
| |
|
|
| |
G.I. Rhyu, W.J. Ray, and J.L. Markley, "The Active
Site Serine Phosphate and Histidine Residues of Phosphoglucomutase: pH
Titration Studies Monitored by Hydrogen-1 and Phosphorus-31 NMR
Spectroscopy," Biochemistry 24, 4746-4753 (1985).
|
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| |
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| |
D.C. McCain and J.L. Markley, "Water Permeability
of Chloroplast Envelope Membranes: In Vivo Measurement by
Saturation-Transfer NMR," FEBS Lett. 183, 353- 358 (1985).
|
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| |
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| |
D.H. Live, C.L. Kojiro, D. Cowburn, and J.L.
Markley, "Identification of Proton NMR Signals from the Metal Ligands in
Cadmium-Substituted Plastocyanin via Two-Dimensional
Multiple-Quantum Detection in the Absence of Explicitly Resolved 1-H -
113-Cd Coupling," J. Am. Chem. Soc. 107, 3043-3045 (1985).
|
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| |
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| |
D.C. McCain and J.L. Markley, "A Theory and a
Model for Interpreting the Proton Nuclear Magnetic Resonance Spectra of
Water in Plant Leaves," Biophys. J. 48, 687-694 (1985).
|
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| |
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| |
R. Virudachalam, M. Harrington, and J.L. Markley,
"Thermal Stability of Cowpea Mosaic Virus Components: Differential
Scanning Calorimetry Studies," Virology 146, 138-140
(1985). |
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1984 |
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| |
C. Arus, M. Barany, W.M. Westler, and J.L.
Markley, "Proton Nuclear Magnetic Resonance of Human Muscle Extracts,"
Clinical Physiol. Biochem. 2, 49-55 (1984). |
|
| |
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|
| |
C. Arus, M. Barany, W.M. Westler, and J.L.
Markley, "1-H NMR of Intact Tissues at 11.1 T," J. Magn. Reson.
57, 519-525 (1984).
|
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| |
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|
| |
C. Arus, M. Barany, W.M. Westler, and J.L.
Markley, "1-H NMR of Intact Muscle at 11 Tesla," FEBS Lett.
165, 231-237 (1984). |
|
| |
|
|
| |
M. Barany, D.D. Doyle, G. Graff, W.M. Westler, and
J.L. Markley, "Natural Abundance 13-C NMR Spectra of Diseased Human
Muscle," J. Mag. Reson. Med. 1, 30-43 (1984). |
|
| |
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| |
J.L. Markley and E.L. Ulrich, "Detailed Analysis
of Protein Structure and Function by NMR Spectroscopy: Survey of Resonance
Assignments," Annu. Rev. Biophys. Bioeng. 13, 493-521
(1984). |
|
| |
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| |
J.L. Markley, W.M. Westler, T.-M. Chan, C.L.
Kojiro, and E.L. Ulrich, "Two- Dimensional NMR Approaches to the Study of
Protein Structure and Function," Federation Proc. 43,
2648-2656 (1984). |
|
| |
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|
| |
D.C. McCain, T.C. Selig, Govindjee, and J.L.
Markley, "Some Plant Leaves Have Orientation-Dependent EPR and NMR
Spectra," Proc. Nat. Acad. Sci. USA 81, 748-752 (1984).
|
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| |
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| |
G.I. Rhyu, W.J. Ray, Jr., and J.L. Markley,
"Enzyme-Bound Intermediates in the Conversion of Glucose 1-Phosphate to
Glucose 6-Phosphate by Phosphoglucomutase. Phosphorus NMR Studies,"
Biochemistry 23, 252-260 (1984). |
|
| |
|
|
| |
W.M. Westler, G. Ortiz-Polo, and J.L. Markley,
"Two-Dimensional 1-H - 13-C Chemical Shift Correlated Spectroscopy of a
Protein at Natural Abundance," J. Magn. Reson. 58, 354-357
(1984). |
|
| |
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|
| |
X. Wu, W.M. Westler, and J.L. Markley, "The
Assignment of Imidazolium N-1-H Peaks in the 1-H NMR Spectrum of a Protein
by One and Two Dimensional NOE Experiments," J. Magn. Reson.
59, 524-529 (1984). |
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| |
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| |
1983 |
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| |
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| |
T.-M. Chan, M.A. Hermodson, E.L. Ulrich, and J.L.
Markley, "Nuclear Magnetic Resonance Studies of Two-Iron-Two-Sulfur
Ferredoxins. 2. Determination of the Sequence of Anabaena
variabilis Ferredoxin II, Assignment of Aromatic Resonances in Proton
Spectra, and Effects of Chemical Modifications," Biochemistry
22, 5988-5995 (1983). |
|
| |
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|
| |
T.-M. Chan and J.L. Markley, "Nuclear Magnetic
Resonance Studies of Two-Iron-Two-Sulfur Ferredoxins. 1. Properties of the
Histidine Residues," Biochemistry 22, 5982-5987 (1983).
|
|
| |
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|
| |
T.-M. Chan and J.L. Markley, "Nuclear Magnetic
Resonance Studies of Two-Iron-Two Sulfur Ferredoxins. 3. Heteronuclear
(13-C,1-H) Two-Dimensional NMR Spectra, 13-C Peak Assignments, and 13-C
Relaxation Measurements," Biochemistry 22, 5996-6002 (1983).
|
|
| |
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|
| |
T.-M. Chan and J.L. Markley, "Nuclear Magnetic
Resonance Studies of Two-Iron-Two-Sulfur Ferredoxins. 5. Hyperfine-Shifted
Peaks in 1-H and 13-C Spectra," Biochemistry 22, 6008-6010
(1983). |
|
| |
|
|
| |
T.-M. Chan, E.L. Ulrich, and J.L. Markley,
"Nuclear Magnetic Resonance Studies of Two-Iron-Two-Sulfur Ferredoxins. 4.
Interactions with Redox Partners," Biochemistry 22,
6002-6007 (1983).
|
|
| |
|
|
| |
C.L. Kojiro and J.L. Markley, "Connectivity of
Proton and Carbon Spectra of Plastocyanin Established by Two-Dimensional
Nuclear Magnetic Resonance," FEBS Lett. 162, 52-56 (1983).
|
|
| |
|
|
| |
E.L. Ulrich, E.-M.M. John, G.R. Gough, M.J.
Brunden, P.T. Gilham, W.M. Westler, and J.L. Markley, "Imino Proton
Assignments in the 1-H NMR Spectrum of the Lambda Phage OR3 DNA Fragment,"
Biochemistry 22, 4362-4365 (1983).
|
|
| |
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|
| |
E.L. Ulrich, W.M. Westler, and J.L. Markley,
"Reassignments in the 1-H NMR Spectrum of Flavin Adenine Dinucleotide by
Two-Dimensional Homonuclear Chemical Shift Correlation," Tet. Lett.
24, 473-476 (1983).
|
|
| |
|
|
| |
R. Virudachalam, K. Sitaraman, K.L. Heuss, P.
Argos, and J.L. Markley, "Carbon-13 and Proton Nuclear Magnetic Resonance
Spectroscopy of Plant Viruses. Evidence for Protein-Nucleic Acid
Interactions in Belladonna Mottle Virus and Detection of Polyamines in
Turnip Yellow Mosaic Virus," Virology 130, 360-371 (1983).
|
|
| |
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|
| |
R. Virudachalam, K. Sitaraman, K.L. Heuss, J.L.
Markley, and P. Argos, "Evidence for pH-Induced Release of RNA from
Belladonna Mottle Virus and the Stabilizing Effect of Polyamines and
Cations," Virology 130, 351-359 (1983).
|
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| |
1982 |
|
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| |
M. Barany, D.D. Doyle, G. Graff, W.M. Westler, and
J.L. Markley, "Changes in the Natural Abundance 13-C NMR Spectra of Intact
Frog Muscle upon Storage and Caffeine-Contracture," J. Biol. Chem.
257, 2741-2743 (1982). |
|
| |
|
|
| |
J.A. Blaszak, E.L. Ulrich, J.L. Markley, and D.R.
McMillin, "High Resolution 1-H NMR Studies of the Nickel(II) Derivative of
Azurin," Biochemistry 24, 6253-6258 (1982).
|
|
| |
|
|
| |
T.-M. Chan and J.L. Markley, "Heteronuclear (1-H,
13-C) Two-Dimensional Chemical Shift Correlation NMR Spectroscopy of a
Protein. Ferredoxin from Anabaena variabilis," J. Am. Chem.
Soc. 104, 4010-4011 (1982).
|
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| |
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|
| |
T.-M. Chan, W.M. Westler, R.E. Santini, and J.L.
Markley, "Carbon-13 NMR Subspectra of a Protein Based on the Number of
Attached Protons. Ferredoxin from Anabaena variabilis," J. Am.
Chem. Soc. 104, 4008-4010 (1982).
|
|
| |
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|
| |
D.C. McCain, R. Virudachalam, J.L. Markley, S.S.
Abdel-Meguid, and M.G. Rossmann, "Carbon-13 Study of Southern Bean Mosaic
Virus," Virology 117, 501-503 (1982).
|
|
| |
|
|
| |
D.C. McCain, R. Virudachalam, R.E. Santini, S.S.
Abdel-Meguid, and J.L. Markley, "Phosphorus-31 NMR Study of Internal
Motion in the RNA of Southern Bean Mosaic Virus," Biochemistry
21, 5390-5397 (1982). |
|
| |
|
|
| |
T. Ogino, D.H. Croll I. Kato, and J.L. Markley,
"Properties of Conserved Amino Acid Residues in Tandem Homologous Protein
Domains. 1-H NMR Studies of the Histidines of Chicken Ovomucoid,"
Biochemistry 21, 3452-3460 (1982).
|
|
| |
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|
| |
T. Ogino, C. Garner, J.L. Markley, and K.M.
Herrmann, "Biosynthesis of Aromatic Compounds: 13-C NMR Spectroscopy of
Whole Escherichia coli Cells," Proc. Natl. Acad. Sci. U.S.A.
79, 5828-5832 (1982). |
|
| |
|
|
| |
M.A.E. Sallam, E.I.A. Hegazy, R.L. Whistler, J.L.
Markley, and D.H. Croll, "Studies on 3-Epimeric L-2-Hexulose
Phenylosazones. Structure and Anomeric Configuration of the
3,6-Anhydro-Osazone Derivatives Obtained from L-xylo and L-xylo-2-Hexulose
Phenylosazone," Carbohydr. Res. 102, 197-206 (1982).
|
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| |
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|
| |
E.L. Ulrich, D.W. Krogmann, and J.L. Markley,
"Structure and Heme Environment of Ferrocytochrome c553 from 1-H
NMR Studies," J. Biol. Chem. 257, 9356-9364 (1982).
|
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| |
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|
| |
W.M. Westler, J.L. Markley, and W.W. Bachovchin,
"Proton NMR Spectroscopy of the Active Site Histidine of a-Lytic
Proteinase. Effects of Adjacent 13-C and 15-N Labels," FEBS Lett.
138, 233-235 (1982). |
|
| |
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| |
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| |
1981 |
|
| |
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|
| |
T.-M. Chan, E.L. Ulrich, and J.L. Markley, "Two
Iron-Two Sulfur Ferredoxin From Spinach and Cyanobacteria. NMR Studies of
Their Structures and Redox Sites," In Photosynthesis II.
Electron Transport and Photophosphorylation, (G. Akoyunoglou, Ed.)
Balaban Int. Science Services, Philadelphia, pp 697-704 (1981).
|
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| |
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|
| |
J.L. Markley, F. Travers, and C. Balny, "Lack of
Evidence for a Tetrahedral Intermediate in the Hydrolysis of Nitroanilide
Substrates by Serine Proteinases," Eur. J. Biochem. 120,
477-485 (1981). |
|
| |
|
|
| |
E.L. Ulrich, D.W. Krogmann, and J.L. Markley,
"Cytochrome c533: Heme Environment and Unpaired Electron
Distribution as Determined by 1-H NMR Spectroscopy at 360 MHz," In
Photosynthesis II. Electron Transport and Photophosphorylation, (G.
Akoyunoglou, Ed.) Balaban Int. Science Services, Philadelphia, pp 583-590
(1981).
|
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| |
1980 |
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| |
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| |
M.W. Baillargeon, M. Laskowski, Jr., D.E. Neves,
M.A. Porubcan, R.E. Santini, and J.L. Markley, "Soybean Trypsin Inhibitor
(Kunitz) and its Complex with Trypsin. Carbon-13 Nuclear Magnetic
Resonance Studies of the Reactive Site Arginine," Biochemistry
19, 5703-5710 (1980).
|
|
| |
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|
| |
J.L. Markley, D.E. Neves, W.M. Westler, I.B.
Ibanez, M.A. Porubcan, and M.W. Baillargeon, "NMR Studies of Serine
Proteinases," Dev. Biochem. 10, 31-62 (1980). |
|
| |
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|
| |
D.C. McCain and J.L. Markley, "Phosphorus-31
Spin-Lattice Relaxation in Aqueous Orthophosphate Solutions," J. Am.
Chem. Soc. 102, 5559-5565 (1980). |
|
| |
|
|
| |
M.A.E. Sallam, E.I.A. Hegazy, R.L. Whistler, and
J.L. Markley, "Studies on 3,6-Anhydro-Osazones of Hexoses:
Characterization and Anomeric Configuration," Carbohydr. Res.
83, C1-C5 (1980). |
|
| |
|
|
| |
M.A.E. Sallam, R.L. Whistler, and J.L. Markley,
"6-Chloro-3-ß-D-Erythrofuranosyl-1-Phenyl- and
-1-p-Tolyl-Pyrazolo-[3,4-b] Quinoxaline," Carbohydr.
Res. 87, 87-97 (1980). |
|
| |
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| |
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| |
1979 |
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| |
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| |
J.L. Markley, "Catalytic Groups of Serine
Proteinases. NMR Investigations," In Magnetic Resonance Studies
in Biology, (R.G. Shulman, Ed.) Academic Press, New York, pp 397-461
(1979). |
|
| |
|
|
| |
M.A. Porubcan, W.M. Westler, I.B. Ibanez, and J.L.
Markley, "Diisopropylphosphoryl Serine Proteinases. Proton and
Phosphorus-31 NMR pH Titration Studies," Biochemistry 18,
4108-4116 (1979).
|
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| |
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| |
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| |
1978 |
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| |
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|
| |
J.L. Markley, "Hydrogen Bonds in Serine
Proteinases and their Complexes with Protein Proteinase Inhibitors. Proton
NMR Studies," Biochemistry 17, 4648-4656 (1978).
|
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| |
|
|
| |
J.L. Markley and I.B. Ibanez, "Zymogen Activation
in Serine Proteinases. Proton Magnetic Resonance pH Titration Studies of
the Two Histidines of Bovine Chymotrypsinogen A and Chymotrypsin Aa,"
Biochemistry 17, 4627-4640 (1978). |
|
| |
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|
| |
M.A. Porubcan, D.E. Neves, S.K. Rausch, and J.L.
Markley, "Active Site in Zymogens, Proton Magnetic Resonance pH Titration
Curves of Histidine-57 in Porcine and Bovine Trypsinogens and in their
Complexes with Bovine Pancreatic Trypsin Inhibitors (Kunitz),"
Biochemistry 17, 4640-4647 (1978). |
|
| |
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|
| |
E.L. Ulrich and J.L. Markley, "Blue Copper
Proteins: Nuclear Magnetic Resonance Investigations," Coord. Chem.
Rev. 27, 109-140 (1978).
|
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| |
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| |
1977 |
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| |
J.L. Markley, E.L. Ulrich, and D.W. Krogmann,
"Spinach Plastocyanin: Comparison of Reduced and Oxidized Forms by Natural
Abundance Carbon-13 Nuclear Magnetic Resonance Spectroscopy," Biochem.
Biophys. Res. Commun. 78, 106-114 (1977). |
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| |
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| |
1976 |
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| |
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| |
J.L. Markley and M.P. Porubcan, "The Charge-Relay
System of Serine Proteinases: Proton Magnetic Resonance Titration Studies
of the Four Histidines of Porcine Trypsin," J. Mol. Biol.
102, 487-509 (1976). |
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| |
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| |
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| |
1975 |
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| |
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| |
J.L. Markley, "Correlation Proton Magnetic
Resonance Studies at 250 MHz of Bovine Pancreatic Ribonuclease. I.
Reinvestigation of Histidine Peak Assignments," Biochemistry
14, 3546-3554 (1975). |
|
| |
|
|
| |
J.L. Markley, "Correlation Proton Magnetic
Resonance Studies at 250 MHz of Bovine Pancreatic Ribonuclease. II. pH and
Inhibitor Induced Conformational Changes Affecting Histidine 48 and One
Tyrosine Residue," Biochemistry 14, 3554-3561 (1975).
|
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| |
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|
| |
J.L. Markley, "Observation of Histidine Residues
in Proteins by Means of Nuclear Magnetic Resonance Spectroscopy,"
Accts. Chem. Res. 8, 70-80 (1975). |
|
| |
|
|
| |
J.L. Markley and W.R. Finkenstadt, "Correlation
Proton Magnetic Resonance Studies at 250 MHz of Bovine Pancreatic
Ribonuclease. III. Mutual Electrostatic Interaction Between Histidine
Residues 12 and 119," Biochemistry 14, 3562-3566 (1975).
|
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| |
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| |
J.L. Markley, W.R. Finkenstadt, H. Dugas, P.
Leduc, and D.R. Drapeau, "Proton Magnetic Resonance Titration Curves of
the Three Histidine Residues of Staphylococcal Protease,"
Biochemistry 14, 998-1005 (1975). |
|
| |
|
|
| |
J.L. Markley and I. Kato, "Assignment of the
Histidine Proton Magnetic Resonance Peaks of Soybean Trypsin Inhibitor
(Kunitz) by a Differential Deuterium Exchange Technique,"
Biochemistry 14, 3234-3237 (1975).
|
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| |
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| |
J.L. Markley, E.L. Ulrich, S.P. Berg, and D.W.
Krogmann, "Nuclear Magnetic Resonance Studies of the Copper Binding Sites
of Blue Copper Proteins: Oxidized, Reduced, and Apoplastocyanin,"
Biochemistry 14, 4428-4433 (1975).
|
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| |
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| |
1973 |
|
| |
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|
| |
J.L. Markley, "High-Resolution Proton Magnetic
Resonance Studies of Two Trypsin Inhibitors: Soybean Trypsin Inhibitor
(Kunitz) and Ovomucoid (Hen Egg White)," Ann. N.Y. Acad. Sci.
222, 347-373 (1973). |
|
| |
|
|
| |
J.L. Markley, "Nuclear Magnetic Resonance Studies
of Trypsin Inhibitors. Histidines of Virgin and Modified Soybean Trypsin
Inhibitors (Kunitz)," Biochemistry 12, 2245-2250 (1973).
|
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| |
|
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| |
J.L. Markley and S.M. Cheung, "Differential
Exchange of the C2-Hydrogens of Histidine Side Chains in Native Proteins:
Proposed General Technique for the Assignment of Histidine NMR Peaks in
Proteins", (Proc. Conf. Stable Isotopes in Biol., Chem. and Med., Argonne,
IL, May 1973), U.S. Atomic Energy Commission CONF- 730525, 103-118 (1973).
|
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| |
1972 |
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| |
O. Jardetzky, J.L. Markley, J. Thielmann, Y.
Arata, and M.N. Williams, "Tentative Sequential Model for the Unfolding
and Refolding of Staphylococcal Nuclease at High pH," Cold Spring
Harbor Symp. Quant. Biol. 36, 257-261 (1972).
|
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| |
|
|
| |
J.L. Markley, "High-Resolution Proton Magnetic
Resonance Spectroscopy of Selectively Deuterated Enzymes," Methods
Enzymol. 26, 605-627 (1972). |
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| |
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| |
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| |
1971 |
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| |
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| |
J.L. Markley, W.J. Horsely, and M.P. Klein,
"Spin-Lattice Relaxation Measurements in Slowly Relaxing Complex Spectra,"
J. Chem. Phys. 55, 3604-3605 (1971).
|
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| |
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| |
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| |
1970 |
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| |
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|
| |
O. Jardetzky and J.L. Markley, "Nuclear Magnetic
Resonance Studies of Selectively Deuterated Staphylococcal Nuclease,"
Farmaco, Ed. Sci. 25, 894 (1970). |
|
| |
|
|
| |
J.L. Markley and O. Jardetzky, "Nuclear Magnetic
Resonance Studies of the Structure and Binding Sites of Enzymes, XIV.
Inhibitor Binding to Staphylococcal Nuclease," J. Mol. Biol.
50, 223-233 (1970). |
|
| |
|
|
| |
J.L. Markley, M.N. Williams, and O. Jardetzky,
"Nuclear Magnetic Resonance Studies of the Structure and Binding Sites of
Enzymes, XII. A Conformational Equilibrium in Staphylococcal Nuclease
Involving a Histidine Residue," Proc. Natl. Acad. Sci. U.S.A.
65, 645-651 (1970).
|
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| |
|
|
| |
I. Putter, J.L. Markley, and O. Jardetzky,
"Nuclear Magnetic Resonance Studies of the Structure and Binding Sites of
Enzymes, XI. Characterization of Selectively Deuterated Analogs of
Staphylococcal Nuclease," Proc. Natl. Acad. Sci. U.S.A. 65,
395-401 (1970).
|
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1969 |
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J.L. Markley, T.C. Hollocher, A.S. Brill, and O.
Jardetzky, "Magnetic Resonance," Phys. Tech. Biol. Res. 2B,
117-223 (1969). |
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I. Putter, A. Barreto, J.L. Markley, and O.
Jardetzky, "Nuclear Magnetic Resonance Studies of the Structure and
Binding Sites of Enzymes, X. Preparation of Selectively Deuterated Analogs
of Staphylococcal Nuclease," Proc. Natl. Acad. Sci. U.S.A.
64, 1396 (1969).
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1968 |
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J.L. Markley, I. Putter, and O. Jardetzky,
"Application of Nuclear Magnetic Resonance in Biochemistry: An Analysis of
the Aromatic Region of the Proton Magnetic Resonance Spectrum of
Staphylococcal Nuclease," Fresenius' Zh. Anal. Chem. 243,
367-374 (1968). |
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J.L. Markley, I. Putter, and O. Jardetzky,
"High-Resolution Nuclear Magnetic Resonance Spectra of Selectively
Deuterated Staphylococcal Nuclease," Science 161, 1249-1251
(1968). |
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1967 |
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J.L. Markley, D.H. Meadows, and O. Jardetzky,
"Nuclear Magnetic Resonance Studies of Helix-Coil Transitions in Polyamino
Acids," J. Mol. Biol. 27, 25-40 (1967).
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D.H. Meadows, J.L. Markley, J.S. Cohen, and O.
Jardetzky, "Nuclear Magnetic Resonance Studies of the Structure and
Binding Sites of Enzymes, I. Histidine Residues," Proc. Natl. Acad.
Sci. U.S.A. 58, 1307-1313 (1967).
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